Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1959 ATGTCTTGGGTTCGAGGGAACTTCATCGGAAGAGGAAGCTTCTCCACCGTTCACCTGGCAGTACCAACCACCAACAGTGTCTCTGAGATTGCTGCCCCAACCGCTGTTAAATCGTCCGAGGTTTCGTCCTGTTCTTTTCTCAAGAACGAGAAGGAGGTTCTGGATTGTCTCGGATTTTGTCCACATATTATACAGTGTTCTGGGGATGGATTTAGCTTCGAGAATGGTGGGGAGTATTATAATTTGTTTTTGGAATATGCCGGCAGTGGTAACCTTGCAGAACATATGAAGAAACAGGGCGGTCGGTTGCCGGAGGCCGATGTCCGGAGGTACACGATGTCGATTGTGAAGGGAATTCAGCATATACACGCGAAAGGATTTGTTCACTGTGATATCAAGCTACAGAACATTCTTCTGTTCGACAATGGAGATGTCAAAATTGCAGACTTCGGCCTCGCGAAGAGAACAGGGGAGAGAGAAGAAAAACAGAGCAGGGAAGAGAAACCGAGTGAATGGAGGGGAACTCCTCTGTTTATGTCGCCGGAATCGGTGAGAGACAATGTGTATAACTCTCCAGCGGATATATGGTCTCTCGGCTGTGCTGTGGTGGAGATGGTGACCGGAAAACCTGCCTGGAGTAGCCCGAACGGGTCGGAATTGAGTAATATTTATTCACTGTTGCTTCGAATTGGGGTGGGCGAAGAACTGCCGGCAATTCCAGAGGAGTTATCAGAAGACGGGAAGGATTTTCTGAGGAAGTGTTTGGTGAAGGATCCGGCAAAGAGATGGACGGCGGAGATGCTTTTGGAGCATCCCTTCATAAAGCAGGACGGTGAAGAAGAATCGTCGCCGAGAAGTCACTTCGATTTTCCAGATTGGGTTTCGAGCACGAGTAGTTTGGCTCCGAATTCCCCGGAATCCGACGAGTGGAGTGAATGGAAATTTGATACGTCGTCGAGTGTTACCAGTTTCTGTTCACCGGCTGATCGGCTCCGACAAGTGGTGAAGGATGAGAGACCAAATTGGTCGGAATCGGAATCTAAAAGTTGGGTGGTTGTTAGGTGA 1065 0.4883 MSWVRGNFIGRGSFSTVHLAVPTTNSVSEIAAPTAVKSSEVSSCSFLKNEKEVLDCLGFCPHIIQCSGDGFSFENGGEYYNLFLEYAGSGNLAEHMKKQGGRLPEADVRRYTMSIVKGIQHIHAKGFVHCDIKLQNILLFDNGDVKIADFGLAKRTGEREEKQSREEKPSEWRGTPLFMSPESVRDNVYNSPADIWSLGCAVVEMVTGKPAWSSPNGSELSNIYSLLLRIGVGEELPAIPEELSEDGKDFLRKCLVKDPAKRWTAEMLLEHPFIKQDGEEESSPRSHFDFPDWVSSTSSLAPNSPESDEWSEWKFDTSSSVTSFCSPADRLRQVVKDERPNWSESESKSWVVVR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1959 354 MobiDBLite consensus disorder prediction 156 172 - -
Acco12g1959 354 ProSitePatterns Protein kinases ATP-binding region signature. 9 37 IPR017441 GO:0005524
Acco12g1959 354 Pfam Protein kinase domain 6 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g1959 354 CDD STKc_MAPKKK 2 274 - -
Acco12g1959 354 ProSiteProfiles Protein kinase domain profile. 3 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g1959 354 SUPERFAMILY Protein kinase-like (PK-like) 3 298 IPR011009 -
Acco12g1959 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Acco12g1959 354 SMART serkin_6 3 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g1959 354 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 327 - -
Acco12g1959 354 MobiDBLite consensus disorder prediction 156 176 - -
Acco12g1959 354 Gene3D Transferase(Phosphotransferase) domain 1 2 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1959 Acco-ChrAcco12 31053874 31054938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1959 1 354 MAP Kinase Kinase Kinase AT3G50310 52.809 2.59e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Acco12g1959 Pkinase 2.7e-56 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2128 11 35287262 35288323 Acco12g1959 12 31053874 31054938 CCT
Acco12g1959 12 31053874 31054938 Acco12g1959 12 31053874 31054938 ECH