Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1956 ATGGGAGATATGTACGGCTATGGAAAGAGTAACTTCATTCTTCCTCCTTCGTCGTCTTCTTCTTTTCCAACCTCACCCTCGGACGAATTTTCCCTTTTTCTGCATCAGATTCTCCTCCCTACCTCCTCCGCCGCTGTACCACCACCGTCTTCCCTCCACACCCACCACATGCCCGAGGACGCTTCTAACATTTCTGAGCATGAAAATGCAAGCCTTTTGTACCCATCTTCTCTGCTTCAAGATGTAATCTCAGGTTTTGATCCTGCCTCTAAAAATCATGCCTTTATCTCGTCTTATATCAAGGGAGGTTCTGCTGCTAATGTGTCTTCCTCATCGGTCGGAGTAAGTGGGAATGAGACTGATGAGTATGAAATTGACAGTGAGGGTGATACTGTTGAAGCAATGGTTGCGAAGTCAGTTCCTCCAAGGCGTTCGTCGAAGAGAAGCAGAGCTGCAGAAATTCATAACTTATCTGAGAAGAGAAGGAGGAGCCGGATCAATGAAAAGCTGAAGGCTTTGCAGAATTTAATTCCAAATTCAAATAAGACTGATAAAGCTTCAATGCTTGATGAAGCTATTGAGTATCTTAAACAGCTTCAGCTTCAAGTCCAGATGCTATCTTTGAGAAATGGATTGAATATGCTTCCTGTGGGATTTGCCGAAGGCTTGCAGCCTCTGTACTTGTCTCAGATGAGAGTTGAATATGGAGAAGAAGAAGAAAACAGGTCATGTCCTTTAAACTTAACTGCCACTAACCAACGCACTGTGCCCTCTCCATCAAATATAATGAACTCAGAGACACCTTTTGGGTTGGATTCCCAAATCATAAGGCATCTTAGACCCTTTGAACTCACAACATCATCTTCTGAGATATGCAGGGGGAACATATTGCAGCACCGGCAATTAATTGCAGAAGATTCAAACACTAATCCTTTGGTTGATTCTCAAGCTGTACGAGAATTTGAGTCAGGCTCGTTGGCTATAGTATCACTCTCCTTTGACAATAAGCAAAACAACCGAAGTGAAGAAGAATTGAAAGCATGCATTGCAAGAGATTAG 1059 0.4315 MGDMYGYGKSNFILPPSSSSSFPTSPSDEFSLFLHQILLPTSSAAVPPPSSLHTHHMPEDASNISEHENASLLYPSSLLQDVISGFDPASKNHAFISSYIKGGSAANVSSSSVGVSGNETDEYEIDSEGDTVEAMVAKSVPPRRSSKRSRAAEIHNLSEKRRRSRINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSLRNGLNMLPVGFAEGLQPLYLSQMRVEYGEEEENRSCPLNLTATNQRTVPSPSNIMNSETPFGLDSQIIRHLRPFELTTSSSEICRGNILQHRQLIAEDSNTNPLVDSQAVREFESGSLAIVSLSFDNKQNNRSEEELKACIARD 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1956 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Acco12g1956 352 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 25 290 IPR031066 -
Acco12g1956 352 MobiDBLite consensus disorder prediction 146 161 - -
Acco12g1956 352 FunFam Basic helix-loop-helix transcription factor 145 208 - -
Acco12g1956 352 MobiDBLite consensus disorder prediction 140 161 - -
Acco12g1956 352 SMART finulus 156 205 IPR011598 GO:0046983
Acco12g1956 352 Gene3D - 145 208 IPR036638 GO:0046983
Acco12g1956 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 209 IPR036638 GO:0046983
Acco12g1956 352 Pfam Helix-loop-helix DNA-binding domain 155 200 IPR011598 GO:0046983
Acco12g1956 352 CDD bHLH_AtPIF_like 150 212 IPR047265 -
Acco12g1956 352 Coils Coil 189 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1956 Acco-ChrAcco12 31026653 31029456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1956 118 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 50.990 3.67e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco12g1956 HLH 6.5e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco12g1956 12 31026653 31029456 Acco12g1956 12 31026653 31029456 ECH