Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1955 ATGATGAACCATCAAGGAGGAACGAGTCACTCAAATTGTAATGCTAACAACCTGAACAAGGTTAATCATCAGTCAACTGGAGCCCTGGAATTTCTTCCTACCGCAAGTTCCCTTGTTGCAGGAGGATATCAAAGGTTCCCTGATCAGGTTTTGGGGTCAAATTATGTCAGTCCAAGTATTGGTTGCAGTGGTGGTGTTGCTCCTCAAAATGTTGACTCAGGTGCAGAATATGCTGGGAACAATTGTTACAACAATTTGAATGTGTCTTTGACTTTAGGCCTTCATTCCTATGGACCAGAAAATGAGAATACCAGCAACTCTTATACAAATGTAATTGATTATGGAAGATCAAGTTCTACAGTGCAAGAGCAAGGTTTAAATGGCAGCTCAATGTACATGAGGCGTTTATCCTGCAAGAGAAAGTCTCCTGAACATACTGTCAGAGAATTGCTAGTAGGTGAGAGTTCTAGCACAGCTGTACATACTGGAACTTCCAAACGGCAGGCTTCCGAAGTCTATGGCAGCAACGGCCTAAACATATCTACTCCTTATACTAGTCCTGTCAGTCATCAAGAACAGTCTGAGACCATTATTTGTCATGGCACTATAAGGCCGGTTTCTGATATGCAGCATTTGAACGGAGCCAGACTATCTGAAAACTTCCAAAGTAACATTCATCATCATACAGCTGCAAATCAACAAGCTTTTCTACCAACCAGCATTTTGTCATCAGCTTACATGAGGAATGCTCATGTCCAGTTACCCAGTCAGTCAACTTTGTATGGTCAAGACAACTATCCCCCTTTCGTCAGGCCCGCAGAAAGAGTTATTAGTTCAATTTCCTCAGTGCAGCCTGATGAGCATGTTCCTTATTTTCATGAATCTTCACAGGCTCCCCCCTGTATTCACATGATGAGATCAAGTGGTGGTTTTTCTTCATTTTTGCCTGTCTATACTGCAGGGGAAAGTGCAGCTGAGGCACCCTTTCATTACTTAAGAAACATAAATGAAAACATCATACTTAGCAACCAAATTGGAAGGGGGAATTGGGCACATGTTGCGAGAAACTCGCACTTTGTGAATGAAACTGCAAACTTCCCTGGAAACTTTTTCTGCCCCCTTCATGGTTTTGCTTCTGATACGATTCATTCAGCAAATGCCCCTGTTTTCTTCACAGGGTTCAATTTTTCTGATCCTTACGCACTGACTACATCAAGAATTGTGAATCATCCTGTGCGCGCAACTACTGGTGTCCCTCATCATAGTCGCAGCCCAGCAGAAGTAGTTTTGCAAGAAATGGGTTATGCTGTTGGATTTGGTAATGCTGTATCTCAGAATCAGCATATATCGGGAGCAAGGTCTGAGAATCATGCTGTTTATTATACATGGTCACTTGCTAATGCTCAAATTAGTATGGGACTGATGCCTGAGGATCTGCATACATCAGAAGCAAGGCTCGAGAATCAAGATATTTATCACCTCTATCATTATTTTTGGTCACCTGCTAATGCTCAAAATAGAAGGAGGCTGAGTCTTGAGCTTCACCATCACCTGACACTTCTGCACAGTGCTGACCCGTCACGGCCTGTGATCATTCCACCGGAATTGAGGATGCTGGACCATTCAGTTTTAACGGATATAGTTATGGGGCTTCAAAATGAAGATGAACCGCATTTTGATTCAGACAACTGGAATAATGAGGATGCTGGCGGACCGGAGGAGGGGCTGAGTGAGGAAATGGTTCTCGGCCAGCTTAGTCAGGAAAAATTCCAGTCCATCCCAGATGGGTCTGAGGAAAATGAATGCTGCTGCATTTGTCAGGAGGAATACCAAGAAGATGAAGATCTGGGTAAGCTGTGGTGCGGTCACAGGTTTCATGCAGACTGTATCAAGCCATGGCTGGAGCTGAAGAACGTCTGCCCCATTTGCAAACAAACTGCACTTCCTATTTGTGATGATTCTCTTTAA 1968 0.435 MMNHQGGTSHSNCNANNLNKVNHQSTGALEFLPTASSLVAGGYQRFPDQVLGSNYVSPSIGCSGGVAPQNVDSGAEYAGNNCYNNLNVSLTLGLHSYGPENENTSNSYTNVIDYGRSSSTVQEQGLNGSSMYMRRLSCKRKSPEHTVRELLVGESSSTAVHTGTSKRQASEVYGSNGLNISTPYTSPVSHQEQSETIICHGTIRPVSDMQHLNGARLSENFQSNIHHHTAANQQAFLPTSILSSAYMRNAHVQLPSQSTLYGQDNYPPFVRPAERVISSISSVQPDEHVPYFHESSQAPPCIHMMRSSGGFSSFLPVYTAGESAAEAPFHYLRNINENIILSNQIGRGNWAHVARNSHFVNETANFPGNFFCPLHGFASDTIHSANAPVFFTGFNFSDPYALTTSRIVNHPVRATTGVPHHSRSPAEVVLQEMGYAVGFGNAVSQNQHISGARSENHAVYYTWSLANAQISMGLMPEDLHTSEARLENQDIYHLYHYFWSPANAQNRRRLSLELHHHLTLLHSADPSRPVIIPPELRMLDHSVLTDIVMGLQNEDEPHFDSDNWNNEDAGGPEEGLSEEMVLGQLSQEKFQSIPDGSEENECCCICQEEYQEDEDLGKLWCGHRFHADCIKPWLELKNVCPICKQTALPICDDSL 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1955 655 ProSiteProfiles Zinc finger RING-type profile. 603 644 IPR001841 -
Acco12g1955 655 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 111 648 IPR045191 GO:0061630
Acco12g1955 655 Pfam Ring finger domain 603 644 IPR001841 -
Acco12g1955 655 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 565 648 IPR013083 -
Acco12g1955 655 SUPERFAMILY RING/U-box 598 649 - -
Acco12g1955 655 SMART ring_2 603 643 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1955 Acco-ChrAcco12 31019371 31023589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1955 486 648 C3H Transcription Factor Family AT2G15530 35.912 1.31e-21 97.8