Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1946 ATGTGGGATCTTAACGACTCGCCTGATCAGATAAACGACAACGAATCAGAAGGATGTTATTCGATGAATGATGATAAAGGAAAGCGGGTCGACGGATCTGTCTCGAATTCAAGCTCATCCGCGCTGGTCATGGAGGACGGATCCGCCGAAGAAGACGGCGAGGGAAGCCGTGGGATTTCAGACGGAAAAGACAGTAGGACGATGCAGAAGATGAAGCGAAGCAGCAAGATATTCGGGTTTTGTGTCACCCATGAAGAGTCATCCCTGGATAGTGCTGAACCCGACCCACCTGTAACCCGACAGTTTATGCCGGTGGAGGAGGCTGACGACGTTGTCGCCGGTGCCGCCAGCACAGCCTTTCCTCGGTCCCACTGGGTAGGCCTAAAATTCAGCCAATCAGAATCAAGAAACGGCGTCGTTGTCGGCGGTGAGGGTAGCGGTGGTGGGAAATCAGTGGAAGTAGGAGTATCGTCGTCGTCGCAGCCTATGATCAAGAAAAACCGGCGAGGCCCACGGTCGAGAAGCTCACAGTATAGAGGAGTCACCTTTTACAGAAGAACAGGTCGATGGGAGTCTCACATATGGGATTGTGGCAAACAAGTCTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCTGCCATTAAGTTCCGAGGAGTAGAAGCAGACATAAACTTCAACATAGAAGACTATGAAGAAGACTTGAAACAGATGGGGAATCTGACGAAGGAAGAGTTCGTGCACGTACTTCGCCGACAAAGCACTGGGTTCCCGAGAGGAAGTTCCAAATATAGAGGTGTAACTTTACACAAGTGTGGAAGATGGGAGGCTCGTATGGGCCAATTTCTTGGCAAAAAGTATGTTTATCTGGGTTTATTTGACACCGAGATTGAAGCTGCCAGGGCTTATGACAAAGCTGCAATAAAGTGCAATGGGAAAGACGCCGTCACCAATTTTGACCCCAGCATCTATGAAAATGAACTTCATTCTGAGTCCTCTGGTAATGCTGATCACAATCTGGATTTAAGTCTGGGCAATACGAGCTCAAATCATGGTGCTAGACAATCATTGGTCAATTTGTCACCATCAGAACAATTGCTGAATAGAAGTAACATGGAATCTCGTCAAAGAAATGGGCACGGCGGTGAGGATGAAACGCTGCGTCTTGTGGGTCAAACTCAGCTTCAATATTCTCAAGCCTCTGATGAAACCCCCAGATATGGTGCCTACAAGACTTCTGGACAACCTCAAATTCTTCACCATTTCCCGAATTTTCACCACCCTAATTATCGGATTACTAGCAGCAGTAATGGAAACGCAGGTCGTTTGGGAAGTGATCTTTCATTGTCAATGAATGATCAAGAACGATGGCAATCTGGCCGTTCTCAATACTTACCCACTGCTGCAGCATCATCAGGATTCCCACAGCAGATCACTACCTCACACTCACAAGCTTGGCTGCAGAAAAATGGGTTCCACACTTCTCTAATGAGACCCTCCTGA 1521 0.4793 MWDLNDSPDQINDNESEGCYSMNDDKGKRVDGSVSNSSSSALVMEDGSAEEDGEGSRGISDGKDSRTMQKMKRSSKIFGFCVTHEESSLDSAEPDPPVTRQFMPVEEADDVVAGAASTAFPRSHWVGLKFSQSESRNGVVVGGEGSGGGKSVEVGVSSSSQPMIKKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPSIYENELHSESSGNADHNLDLSLGNTSSNHGARQSLVNLSPSEQLLNRSNMESRQRNGHGGEDETLRLVGQTQLQYSQASDETPRYGAYKTSGQPQILHHFPNFHHPNYRITSSSNGNAGRLGSDLSLSMNDQERWQSGRSQYLPTAAASSGFPQQITTSHSQAWLQKNGFHTSLMRPS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1946 506 ProSiteProfiles AP2/ERF domain profile. 177 233 IPR001471 GO:0003700|GO:0006355
Acco12g1946 506 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 103 416 - -
Acco12g1946 506 SUPERFAMILY DNA-binding domain 268 328 IPR016177 GO:0003677
Acco12g1946 506 CDD AP2 176 234 IPR001471 GO:0003700|GO:0006355
Acco12g1946 506 SMART rav1_2 269 332 IPR001471 GO:0003700|GO:0006355
Acco12g1946 506 SMART rav1_2 177 239 IPR001471 GO:0003700|GO:0006355
Acco12g1946 506 MobiDBLite consensus disorder prediction 334 381 - -
Acco12g1946 506 FunFam AP2-like ethylene-responsive transcription factor 268 328 - -
Acco12g1946 506 ProSiteProfiles AP2/ERF domain profile. 269 326 IPR001471 GO:0003700|GO:0006355
Acco12g1946 506 MobiDBLite consensus disorder prediction 152 166 - -
Acco12g1946 506 MobiDBLite consensus disorder prediction 142 177 - -
Acco12g1946 506 SUPERFAMILY DNA-binding domain 176 234 IPR016177 GO:0003677
Acco12g1946 506 CDD AP2 268 328 IPR001471 GO:0003700|GO:0006355
Acco12g1946 506 MobiDBLite consensus disorder prediction 1 70 - -
Acco12g1946 506 Gene3D AP2/ERF domain 176 235 IPR036955 GO:0003700|GO:0006355
Acco12g1946 506 Gene3D AP2/ERF domain 268 327 IPR036955 GO:0003700|GO:0006355
Acco12g1946 506 MobiDBLite consensus disorder prediction 334 392 - -
Acco12g1946 506 Pfam AP2 domain 177 225 IPR001471 GO:0003700|GO:0006355
Acco12g1946 506 Pfam AP2 domain 268 317 IPR001471 GO:0003700|GO:0006355
Acco12g1946 506 MobiDBLite consensus disorder prediction 50 70 - -
Acco12g1946 506 FunFam AP2-like ethylene-responsive transcription factor 176 235 - -
Acco12g1946 506 PRINTS Ethylene responsive element binding protein signature 270 281 IPR001471 GO:0003700|GO:0006355
Acco12g1946 506 PRINTS Ethylene responsive element binding protein signature 308 328 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1946 Acco-ChrAcco12 30913219 30916201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1946 1 506 AP2-EREBP Transcription Factor Family AT4G36920 53.462 6.20e-138 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Acco12g1946 AP2 3.5e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2106 11 35055367 35057897 Acco12g1946 12 30913219 30916201 CCT
Acco12g1946 12 30913219 30916201 Acco12g1946 12 30913219 30916201 ECH