Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1940 ATGGAAGCTGAACAAGCGGCTTTGGGCGATAAGAAGAGAGGGGTCGAAGGAGAGAGAAAGTACAAAGGGATCAGGTTGAGGAAGTGGGGCAAGTGGGTTGCTGAAACCAGAGAACCTAATAAACGTTGTCGGATTTTTCTCGGATCCTATTCTACACCCGTCGCTGCCGCCAGAGCCTACGACACCGCCGTTTTCTATCTCAGAGGATCTTCCGCTCGCCTTAATTTCCCGGACCTCCTTACCGGAGAAGGCTGCTTGGCCGCCGCCGCCGGTGAATTGTCCTTGCCTTCGATTCGCAAGAAAGCCATCGAAGTCGGCAATAGAGTGGATGCCCTTCACTCGGATCACAACCATCACCATCAACACCACGCGTCGGCGGAGGCATCGGAGCTCATGCCTCGCGGCGCTGGAGCGAGCGTGGTTGACCAGAACAAGATGCCGGAACCGGAGAATCCGGCTAGGTAA 465 0.557 MEAEQAALGDKKRGVEGERKYKGIRLRKWGKWVAETREPNKRCRIFLGSYSTPVAAARAYDTAVFYLRGSSARLNFPDLLTGEGCLAAAAGELSLPSIRKKAIEVGNRVDALHSDHNHHHQHHASAEASELMPRGAGASVVDQNKMPEPENPAR 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1940 154 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Acco12g1940 154 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Acco12g1940 154 PRINTS Ethylene responsive element binding protein signature 59 79 IPR001471 GO:0003700|GO:0006355
Acco12g1940 154 MobiDBLite consensus disorder prediction 115 154 - -
Acco12g1940 154 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Acco12g1940 154 CDD AP2 20 79 IPR001471 GO:0003700|GO:0006355
Acco12g1940 154 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Acco12g1940 154 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 151 - -
Acco12g1940 154 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Acco12g1940 154 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Acco12g1940 154 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1940 Acco-ChrAcco12 30832438 30832902 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1940 7 151 AP2-EREBP Transcription Factor Family AT2G23340 54.305 2.81e-45 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco12g1940 AP2 7.4e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2103 11 35029883 35040613 Acco12g1940 12 30832438 30832902 CCT
Acco12g1940 12 30832438 30832902 Acco12g1940 12 30832438 30832902 ECH