Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1933 ATGGTTTGCAGTTCCACTCAACGCCTCATCTGTGCCAATTTATCATCAACCTATTCAATTGCATCTGAATTCATACACGATCCTACTCAACCGTTCACAATCACAATGTTTCATTTCAAAAACCTCTTTCCTCGCTTCTTCTTCTTCTTCTTCACCCTCTCCACCGTCTTCTCCGATCAGTCTTCTCCGGCTTCCTCCAATCTGGTCCTCTCCTCCGACGTCGTTTCATTGCTTTCTTTCAAGTCCAAAGCGGACCTCGACAACAAGCTTCTCTATGCTCTTCATGAGCGCTTCGATTACTGTCAATGGCAAGGCGTCAAGTGCGCCCAGGGCCGAGTGGTTCGCTTCTTCCTTCAGGGCTCTGGTCTTCGAGGCGTCTTCGCTTCCGACACCCTCTCTCGCCTCGACCAGCTTCGAGTCCTCTGCCTCCGAAATAATTCCCTCTCCGGTCCCATCCCCGATCTCTCCCCCCTCTTCAACCTCAAGGGTCTCCTCCTCGACCATAATTTTTTCTCTGGTTCGTTACCTCCTTCTTTTCTTTTGCTTCATCGCCTTCGTACTCTTTCTCTCTCTTATAACAACCTCACTGGTTTGATCCCTGTCGAGTTAGTTAGTTTGGACCGTTTAGTAACCCTCCGCCTTGACTCGAACCACTTTAATGGAACTGTTCCGCCGTTGAACCAGTCCTCCCTTCTTATCTTCAGTGTCTCCGGCAATAACCTCACAGGGCCGATTCCGGCAACTCTCACCCTGGCTCGATTTCACACGGCGTCGTTTTCGGGGAATCCAGGTCTATGTGGGGACATTATTTCCAAAGCATGTGATCATCCTCATCCTCCAATCCTTGGTTCTTCCAATGCCCCTGTCTACTTGGGGCAAAGCGCCGAATCACAGGGAAACATCGTCGTTTCTTCGCTGAATAGAAAGAAGCACAGGGGTAACGGCCTGATTATTGGGTCCACCATTGGTACGTTGATTCTGATTGCGTCTTTTCTAGGGTTTATCGCGGTGGTTAGGAAACGGAGTATTTCGAGTAAACTAGAAAGCCCAAAAATGGCGGCAATGGGACCCAAAGATGCTTCGCCGGGGAAGAAAATTGAGGAAATCGATGGTGCTGATAATCATAATAGAGAGAATTTGGTGTTCTGTTGTGGGGAGGTACAATTATATACGCTGGATCAGCTGATGAGAGGGTCGGCCGAGTTACTGGGTAGGGGTACAATCGGGACTACGTACAAAGCAGTGGTGGATGGCAGCTTCATTTTGACAGTAAAGAGGCTAGATGCTGGGAAGACTGCAAGAGCAAGTGGTTATTTTGAGAGGCACATGGAAATGGTGGGTCAGCTTCGGCATCCAAATTTAGTACCGGTTAGAGCTTATTTTCAGGCTGAAGCAGAGAGGTTGGTGATCTATGATTATCAATCCAACGGCAGCCTCTTCAACCTCATTCATGGTTCAAGATCAGCAAGAGCAAAGCCTCTTCACTGGACATCATGCTTGAAGATAGCTGAAGACATAGCTCATGGACTTGCGTATATCCACCAAACATCAAGATTAATCCACGGCAACCTAAAGTCCTCTAATGTCCTTCTTGGAGTGAACTTCGAAGCTCGTGTTACAGACTATAGCCTGTCCCTCCTTATTGACTCTTCATCCAGTGATGGTCCTGATACTGCTGCCTATAAAGCACCCGAAACTCGCAAGACTAATCGCCTACCTACTTCTAAATCTGATGTCTATACATTTGGGGTACTTCTGCTGGAGCTTCTAACTTCCAAATACCCTTCTCAGCATCCCTTCCTTGTGCCTATGGATCTGCAGAATTGGGTCAGAGCAATGAGGAATGACTATGGTGCTGAAGATAAGCAGCTAGGAATGCTTACAGAGGTCGCAAGTATCTGCACTGTTATATCACCTGAGCAGAGACCAGCTATGTGGCAAGTCTTGAAGATGATACAGGAAATTAAAAAGAGTGTAACATTTGAAGGTAGTATATCTACTGGGTTTATATAG 2013 0.4719 MVCSSTQRLICANLSSTYSIASEFIHDPTQPFTITMFHFKNLFPRFFFFFFTLSTVFSDQSSPASSNLVLSSDVVSLLSFKSKADLDNKLLYALHERFDYCQWQGVKCAQGRVVRFFLQGSGLRGVFASDTLSRLDQLRVLCLRNNSLSGPIPDLSPLFNLKGLLLDHNFFSGSLPPSFLLLHRLRTLSLSYNNLTGLIPVELVSLDRLVTLRLDSNHFNGTVPPLNQSSLLIFSVSGNNLTGPIPATLTLARFHTASFSGNPGLCGDIISKACDHPHPPILGSSNAPVYLGQSAESQGNIVVSSLNRKKHRGNGLIIGSTIGTLILIASFLGFIAVVRKRSISSKLESPKMAAMGPKDASPGKKIEEIDGADNHNRENLVFCCGEVQLYTLDQLMRGSAELLGRGTIGTTYKAVVDGSFILTVKRLDAGKTARASGYFERHMEMVGQLRHPNLVPVRAYFQAEAERLVIYDYQSNGSLFNLIHGSRSARAKPLHWTSCLKIAEDIAHGLAYIHQTSRLIHGNLKSSNVLLGVNFEARVTDYSLSLLIDSSSSDGPDTAAYKAPETRKTNRLPTSKSDVYTFGVLLLELLTSKYPSQHPFLVPMDLQNWVRAMRNDYGAEDKQLGMLTEVASICTVISPEQRPAMWQVLKMIQEIKKSVTFEGSISTGFI 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1933 670 Gene3D Transferase(Phosphotransferase) domain 1 475 665 - -
Acco12g1933 670 Gene3D Ribonuclease Inhibitor 229 277 IPR032675 -
Acco12g1933 670 FunFam Leucine-rich repeat receptor-like protein kinase 184 276 - -
Acco12g1933 670 MobiDBLite consensus disorder prediction 552 572 - -
Acco12g1933 670 Pfam Leucine rich repeat 160 219 IPR001611 GO:0005515
Acco12g1933 670 ProSiteProfiles Protein kinase domain profile. 397 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g1933 670 ProSiteProfiles Leucine-rich repeat profile. 184 205 IPR001611 GO:0005515
Acco12g1933 670 SUPERFAMILY Protein kinase-like (PK-like) 401 656 IPR011009 -
Acco12g1933 670 SUPERFAMILY L domain-like 76 267 - -
Acco12g1933 670 Gene3D Phosphorylase Kinase; domain 1 378 473 - -
Acco12g1933 670 FunFam Probable inactive receptor kinase At5g67200 72 182 - -
Acco12g1933 670 Pfam Protein tyrosine and serine/threonine kinase 401 650 IPR001245 GO:0004672|GO:0006468
Acco12g1933 670 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 49 657 IPR046959 -
Acco12g1933 670 Gene3D Ribonuclease Inhibitor 71 228 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1933 Acco-ChrAcco12 30790112 30793233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1933 70 661 Receptor kinase-like Gene Family AT3G50230 54.167 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Acco12g1933 PK_Tyr_Ser-Thr 1.4e-29 CL0016