Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1900 ATGGGAGACAACGGTGCGTCACCCTGTGCCTTGATGGATTCGTCCATAGATTTTGATTACATGGACGATCTTTTCTCAGATGGATGCTGGTTGGAAGCCGCTGCAGATGGATCTGATTTCTTGCTGCGAAGCCCTACTGCGGCTAATCCCCTCCTTGACTCATCATTTTCATGGCCTGCCTTGGACACTAACGGGCATGTGAATCTAGAACAAAGGCAGAGTCCGTTGATTGGCGACTACCTGGAAACACAAACCAATGTAACTCGATCGTTTGGCCAGGGCAAGGGCAAGGACATGGTAGATGTTGCTGCGACTTGTGATCTGTCTGAAACTCGTTCAGCTGAAAGCTCAGCAGTCGTTAGGAGGTGGTGGATTGGACCTATGGCTAATCCAAGTCCTGAATGTTCTGTTTTGGAGAGACTAATTAAGGCACTTGTGTATATCAGAGATTTCAATAGAGACATAGACATGCTTTTACAATTATGGGTGCCTGTTAATAGAGAGCGTGGGAGGATTCTAAGCACTCGTGATCTTCCCTTCTCACTCGAAAGCAGCAGTCCAAATCTTGCCAAGTATCGAGAAATCTCTGCCAAATATCATTTTCCAGCTGATGGATGTTCTGAGGGGTTGGTGCCTGGATTGCCTGGTCGAGTTTTTAAAGAGAAGGCTCCTGAGTGGACCCCTGATGTTCGATTTTTCAGGAGCGATGAGTACCCTCGAGTTGACCATGCTCAAGAGTATGATGTGCGTGGATCTTTAGCACTTCCAGTCTTTGAGCAAAGTAGCAACATTTGCTTGGGTGTTATTGAGGTTGTAATGACAGCCCAGAAGATTAAGTGTTTCCCTGAGCTTGAGTCTGTTTGCAAAGCACTTGAGGCTGTGGATCTGAGAAGCAGAAATATCTCAAGTGTACAGAATGTGGAGGCATGCGACAATTCCTATGAGGCTGTACTGCCTGAGATCCAAGAGGTTTTGAGATCAGCATGTGAAATGCACAAATTACCTTTAGCTCAAACCTGGGTTCCCTGTATCAAGCAAGGCAAAGAGGGGTGCCGGCACACAGATGACAATTATCTACACTGTATATCTCCTGTTGAGCATGCTTGTTATGTTGGTGATCCTTGTTTCCAGGCCTTTCATGAGGCTTGCTCTGAGCATCACTTGTTAAAAGGTCAAGGTGTCACTGGTGAAGCTTTTATAACCAATCAACCATGCTTCTCAACTGATGTAACTTCCTTTAGCAAGATAGATTATCCACTATCTCATCATGCAAGGATTTTTGGGTTGCGAGCTGCTGTTGCTATTCGCCTACGAAGCATCCACAACAGTACAGATGACTTTGTACTTGAGTTCTTCTTGCCTGTAAATTGCACTGACAGTGAAGAACAGAAGAAGATGCTCACTTCATTGTCTATGATTATACAGAGGGTTTGCTGTAGTCTGCGGGTGATTTCCAACAAAGAATTGGAGGAAGCCAGCTTATCAATTTATGAAGTGACAGTCCCTGCAGAGAGTAGATCTGCTAGGATGGAGTTAAAACAATGCACGAAGGTTGCTTCACATAGCACCAAAGAAAAGTCAAATGAAAATTTGACTACGCAGGTGTCTAATCTGAGTCAGCAAGAAGATTCTATTTTAAAAGGAAACCTTGACTGTGGTTGGGAGTATTCTTCTTTTGGTGAGGGTGGCTTGCCGATTGCAGGTTTAAGTAAAACGGGAGACAAAAGACGGACCAAAGCAGAGAAAACCATCACCCTGCAAGTTCTTCGCCAATATTTTGCAGGAAGCCTAAAAGATGCTGCAAAGAATATTGGAGTTTGTACTACAACTTTGAAAAGAATCTGTCGCCAACATGGGATAAAGCGTTGGCCTTCTCGAAAGATTAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATCGACTCAGTTCAAGGTGCCTCTAGTGCTTTTCAGATAGATTCTTTCTACTCAAAGTTTCCGGAGCTGGCATCTCCAAATTTGCCAGGAAGCAGCTTGTTCTCAGCTTCAAAACAAAGCAATCTTCCAAATCCATCAAGTACAATGCCTGATACTGCCTTGCTGAGCCCAGAAGCACCCTCATCTTCATGCAATCAAAGTTCCAGTTCAAGCCATTCCTCTTCCAACATGTCAGAGTTACAGCTTCATACACAAAATGTTGCAGGTGGAAAAGCTCAGAGATTTAGAGAAGATTCTGATAATGGGGTTATGAAGAGGGTTCCAAGTGAAGTAGGGCTAAAAAGCTCAAGTCAAGATACATCAGAGCTCTTGCCAACATCCCAAAGCCAGGAAACACCTTGTGTGCATCCAAAAACTGTGTTGAAAAGCAGTCATAATGTACATAAAAAAGAAGATACTCGAAGAGTAAAAGTCACTTTCAGAGAGGAGATAACCCGGTTTCGGATGCCGAAGAATTGGCGTTATGAAGATCTTTTGTGGGAAATTGCTTGGCGGTTCAACATAGATGACATGCGCAAATTCGATATAAAGTATCTGGATGATGACTCTGACTGGGTTTTACTAACTTGTGATGCTGATTTAGAGGAGTGCATTGATGTTTGTCAACATTCTCAGAGCAGTACCATCAAGTTTTGTCTTCTGGATCGTAAATCATAG 2640 0.436 MGDNGASPCALMDSSIDFDYMDDLFSDGCWLEAAADGSDFLLRSPTAANPLLDSSFSWPALDTNGHVNLEQRQSPLIGDYLETQTNVTRSFGQGKGKDMVDVAATCDLSETRSAESSAVVRRWWIGPMANPSPECSVLERLIKALVYIRDFNRDIDMLLQLWVPVNRERGRILSTRDLPFSLESSSPNLAKYREISAKYHFPADGCSEGLVPGLPGRVFKEKAPEWTPDVRFFRSDEYPRVDHAQEYDVRGSLALPVFEQSSNICLGVIEVVMTAQKIKCFPELESVCKALEAVDLRSRNISSVQNVEACDNSYEAVLPEIQEVLRSACEMHKLPLAQTWVPCIKQGKEGCRHTDDNYLHCISPVEHACYVGDPCFQAFHEACSEHHLLKGQGVTGEAFITNQPCFSTDVTSFSKIDYPLSHHARIFGLRAAVAIRLRSIHNSTDDFVLEFFLPVNCTDSEEQKKMLTSLSMIIQRVCCSLRVISNKELEEASLSIYEVTVPAESRSARMELKQCTKVASHSTKEKSNENLTTQVSNLSQQEDSILKGNLDCGWEYSSFGEGGLPIAGLSKTGDKRRTKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASSAFQIDSFYSKFPELASPNLPGSSLFSASKQSNLPNPSSTMPDTALLSPEAPSSSCNQSSSSSHSSSNMSELQLHTQNVAGGKAQRFREDSDNGVMKRVPSEVGLKSSSQDTSELLPTSQSQETPCVHPKTVLKSSHNVHKKEDTRRVKVTFREEITRFRMPKNWRYEDLLWEIAWRFNIDDMRKFDIKYLDDDSDWVLLTCDADLEECIDVCQHSQSSTIKFCLLDRKS 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1900 879 ProSiteProfiles RWP-RK domain profile. 570 651 IPR003035 -
Acco12g1900 879 PANTHER PROTEIN NLP8 119 874 IPR045012 GO:0003700
Acco12g1900 879 ProSiteProfiles PB1 domain profile. 794 877 IPR000270 GO:0005515
Acco12g1900 879 MobiDBLite consensus disorder prediction 752 777 - -
Acco12g1900 879 SMART PB1_new 794 877 IPR000270 GO:0005515
Acco12g1900 879 Pfam PB1 domain 794 873 IPR000270 GO:0005515
Acco12g1900 879 Gene3D - 790 874 - -
Acco12g1900 879 Pfam RWP-RK domain 583 631 IPR003035 -
Acco12g1900 879 SUPERFAMILY CAD & PB1 domains 787 876 - -
Acco12g1900 879 CDD PB1_NLP 796 874 IPR034891 -
Acco12g1900 879 MobiDBLite consensus disorder prediction 676 777 - -
Acco12g1900 879 MobiDBLite consensus disorder prediction 676 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1900 Acco-ChrAcco12 30369515 30372973 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1900 16 874 NLP Transcription Factor Family AT1G20640 49.254 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Acco12g1900 PB1 1.3e-20 CL0072