Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1879 ATGACGCAATTCACACCAACACTACAACCTTTGCACCAAATCAGCGATAGCAACAACATTCTAGTACCTAGGATTACCAATTCATGGGCGAAATTCCAACAATCTAAGGCACTAGGAACCTTGGGCGATGGTAATTGCATGGAACAGTTGCTTATTCACTGTGCAGACGCCATCGAATCCAATGACGTCACTCTCGCCCAACAAATCCTCTGGGTTCTCAACAACATCGCACCTCCTGACGGCGACTCCAACCAGCGTCTCGCCGCCACATTCCTGCGGGCCCTCATCGCTAGAGCCACCAAGTCTGGGAGCTCCAAGTTGTTAGCCGCCGTAGCCGCGAGCGCCGCCCACAACAACAACAACACCGCCACCAGCCTCGCCGTCCAAACCCACCTCTTCTCCCTCATGGAGCTAGCCAACTTCGTCGACGTCACTCCGTGGCATCGCTTCGGCTTCGCTGCCGCCAACTCAGCCATTCTAGAAGCCACGGAAGGTTTTCCCACCATCCACATCGTTGACCTCAGCTCAACACACTGCATGCAGATTCCCACCCTAATTGACGCCATCGCTTCCCGCCACGACGTCCCTCCCCTGATCAAGCTCACAATCACGGAAGCTTCAAGAAACATCCCACCTATACTCAACCTATCCTACGACGAACTTGGATCAAAGCTGGTCAACTTCGCCAAGTCCAAAAACATTATGATGGATTTCAGAGTGATCCGTTCGACTCACGAAGACGGATTCGCCGCCCTGATCCAATACCTCGGGTTGCACCGCCACCGTGTCATGACGTCGGAAGCTCTGGTGATAAACTGCCACATGATGCTTCATTGTATCCCCGACGAAACCCTATCTGCGGCTAGTTCTCCTCCATCTCTAAGATCACTGTTTCTGAAGGCGCTACGGAGATTGAACCCAACGCTTGTCGTTTTGGTGGAGGAGGACGCGGATTTGACATGGAGACATTTGGTGAGTAGGCTGAGGGCTGCGTTTAACTTTATGTGGATACCATACGACACAGTGGAGACGTTACTTCAAAGAGGGAGTAAGCAGAGGCAGTGGTATGAAGCGGATATATGTTGGAAGATAGAGAATGTGATAGCGCAGGAAGGGTTTGAGAGGGTAGAGAGATTGGAGGGTAGAATCAGGTGGGAGCAGCGTATGAGGAATGCTGAGTTTCAGGGGATTAGCTTCAGTGACGACGCCGTTTCGGAGGTGAAGGCCATGCTGGATGAACATGCAGCTGCTTGGGGATTCAAGAAGCAAGACCAACATCTTCTGCTCACGTGGAAAGGACATAATGTCGTTTTTGCCTCAGCTTGGTTTCCAGCTTGA 1338 0.5187 MTQFTPTLQPLHQISDSNNILVPRITNSWAKFQQSKALGTLGDGNCMEQLLIHCADAIESNDVTLAQQILWVLNNIAPPDGDSNQRLAATFLRALIARATKSGSSKLLAAVAASAAHNNNNTATSLAVQTHLFSLMELANFVDVTPWHRFGFAAANSAILEATEGFPTIHIVDLSSTHCMQIPTLIDAIASRHDVPPLIKLTITEASRNIPPILNLSYDELGSKLVNFAKSKNIMMDFRVIRSTHEDGFAALIQYLGLHRHRVMTSEALVINCHMMLHCIPDETLSAASSPPSLRSLFLKALRRLNPTLVVLVEEDADLTWRHLVSRLRAAFNFMWIPYDTVETLLQRGSKQRQWYEADICWKIENVIAQEGFERVERLEGRIRWEQRMRNAEFQGISFSDDAVSEVKAMLDEHAAAWGFKKQDQHLLLTWKGHNVVFASAWFPA 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1879 445 ProSiteProfiles GRAS family profile. 38 443 IPR005202 -
Acco12g1879 445 Pfam GRAS domain family 47 442 IPR005202 -
Acco12g1879 445 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 46 433 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1879 Acco-ChrAcco12 30176733 30178070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1879 24 444 GRAS Transcription Factor Family AT3G49950 57.075 8.16e-171 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Acco12g1879 GRAS 1.7e-91 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco12g1879 12 30176733 30178070 Acco12g1879 12 30176733 30178070 ECH