Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1876 ATGAGTTGCAACGGTTGCCGAGTTCTTCGAAAAGGATGCAGTGAGAACTGTATATTGCGACCTTGCTTGCAGTGGATCGATAACCCTCAGGCCCAAGGTTACGCCACTGTGTTCGTCGCTAAATTCTTTGGCCGTGCCGGCCTTATGTCTTTCATTTCTAACGTCCCTCCCAACCAGAGGCCTGCTCTGTTTCAGTCCTTGTTGTTCGAATCGTGCGGCCGGACGGTGAACCCTGTGAACGGAGCTGTCGGGCTTCTGTGGACAGGAAACTGGCACGTGTGCCAGGCCGCCGTGGAGACAGTGCTGCGCGGTGGCACGTTGAAGCCCATGCCGGAGCTTGTAGGCTTGGATGCCCCGGCTCAGGCTACGGATGAGGCATCCGAAGGGGAGGTCACGTGCAATGACATGTGGAGGATCCGAGATCCGAACTCGAATTTGCGATGTGATAACAAGGTCTCTCCCGGCGACGGACTCAGACTGTCCGATGACTCTGCTATGCTCCAGACGACTGATCACGACCTCCGATTGACGCCAAGCTTCACTCATAAAGTTCCTGCCTACGGTTGCGGACCAGAAGTCGGATGGCTGGGTTCGCCGTCGATGAACTCGGAAGAATCCGTCACGACGGCGACTTGTTTGGAAAGCGGGATCGGATATAACCAAGCTCACGGCGGAGACCCGAAGCTTCTCAACCTTTTCATTTGA 705 0.556 MSCNGCRVLRKGCSENCILRPCLQWIDNPQAQGYATVFVAKFFGRAGLMSFISNVPPNQRPALFQSLLFESCGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLKPMPELVGLDAPAQATDEASEGEVTCNDMWRIRDPNSNLRCDNKVSPGDGLRLSDDSAMLQTTDHDLRLTPSFTHKVPAYGCGPEVGWLGSPSMNSEESVTTATCLESGIGYNQAHGGDPKLLNLFI 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1876 234 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Acco12g1876 234 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 203 - -
Acco12g1876 234 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1876 Acco-ChrAcco12 30119884 30120723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1876 1 234 AS2 family AT4G37540 55.967 7.84e-79 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Acco12g1876 LOB 1.8e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco12g1876 12 30119884 30120723 Acco11g2036 11 34562410 34563216 CCT
Acco11g2036 11 34562410 34563216 Acco12g1876 12 30119884 30120723 ECH
Acco12g1876 12 30119884 30120723 Acco12g1876 12 30119884 30120723 ECH