Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1872 ATGGAGACTTATTTACAAGAAAACTTTGAAGTCAAGTGCAAGAACTCATCTGAAGAGGTTCTTCAGAATTGGAGAAAACTATGCGGGATTGTTAAGAACCCCAAAAGAAGGTTTCGCTTCACTGCTAATCTCTCCAAGCGAAGCGAAGCCGCTGCCATGCGTCGCACCAATCAGGAGAAATTGAGGGTTGCCGTTTTGGTTTCCAAAGCTGCTTTTCAGTTTATCCAAGGTGCGCAACCAAGTGATTACATAGTACCTGAAGAAGTTAGAGAAGCAGGCTTCCAGATCTGTGCGGATGAATTGGAGTCCATTGTAGAAGGACACGACATAAATAAACTAAAATATCATGGTGGGGTTGAAGGTATCTCAGAAAAGCTTTCAACTTCAACCACTGATGGTATCAGCAATGACTCCGACCAACTTATCAAGAGACTAGAAATCTACGGAATCAACAAATTCACTGAAAGCGAATCCCGTAGTTTCTGGGTTTTTGTCTTCGAAGCCCTTCAAGACATGACACTAATGATCCTAGGCGTGTGTGCGGTTGTCTCTCTTATAATCGGAATAGCGACAGAAGGATGGCCCAGAGGAGCTCACGATGGCCTAGGAATAGTCGTAAGTATCCTCCTGGTGGTGTTTGTGACAGCAACAAGTGATTATCGCCAATCATTACAGTTCAAAGACTTAGACAAGGAGAAGAAAAAGATCTACGTGCAGGTCACAAGAAATGGGTATAGAGAAAAAATGTCAATATATGATTTAATTACCGGCGACATTGTTCATCTAGCTATCGGAGATCAAGTCCCCGCCGATGGACTCTTTGTTTCAGGATTCTCTGTTTTGATTGATGAGTCAAGTTTAACCGGGGAGAGCGAACCAGTGATGGTGAATTCTCAGAACTCATTTCTTCTTTCAGGAACAAAAGTTCAAGATGGATCATGTAAAATGCTGGTCACAACCGTAGGGATGAGAACTCAATGGGGAAAATTAATGGCTACGTTAAGTGAAGGAGGAGATGATGAAACGCCGTTACAGGTGAAACTTAACGGAGTTGCCACTATCATAGGGAAGATGGGCTTGTTCTTCGCTGTTATTACTTTTGTCGTTTTGATGAAGGGACTTATGGCACGTAAACGACAAGAAGGAAGATTTTGGAGTGTGTCCGGAGACGACGCCATGGAGATGTTGGAATTCTTTGCCGTTGCCGTTACCATCGTTGTCGTTGCCGTTCCAGAAGGTTTGCCATTAGCTGTGACACTGAGCCTTGCGTTTGCTATGAAAAAAATGATGAACGACAAAGCACTTGTACGACACTTGGCAGCCTGTGAAACGATGGGTTCAGCGACAAGTATTTGTAGTGACAAGACAGGAACCTTAACGACCAATCGCATGACTGTTGTCAAAACCTGCATATGTATGAACATCAAGGAAGTAACCAATGAGGAACAACAAACAGATAAGTTATTACCAGATTCTGCTTTGAAACTGTTATTAGAGTCTATATTTAATAACACTGGAGGAGAAGTTGTGGCTAAGAGAAAAAGCAAAAGGAAACGTGAGATATTGGGTACACCTACAGAAGCTGCAATATTGGAATATGGACTTTCACTTGGTGGGGATTTTCAGAAAGAGAGAGAAGCATACAAGATTGTGAAAGTTGAGCCATTTAACTCAGAAAAAAAGAGAATGGGTGTGGTTTTGGAACTTCCTGAAGGAAATCTTAGAGCTCATTGTAAAGGTGCTTCTGAGATTGTCCTAGCTGCTTGTGACAAAGTGATTGATTCAAACGGTGAGGTTGTACCAATTGATGCAGAGAAAAGTAATTTTCTTAAAGAAACAATCCATTCTTTTGCTTGTGAGGCACTTAGAACTCTTTGCCTTGCTTATATGGAATTGGAAGATGGGTTTTCTGCTGAAGATCCTATTCCTAGTTCTGGATATACTTGTGTTGGGATTGTTGGTATCAAAGATCCTGTTCGTCCTGGTGTTAAGGAATCTGTTACAATATGTCGTAAAGCGGGTGTAACAGTTAGAATGGTCACAGGTGATAATATTAATACTGCAAAGGCTATAGCGAGAGAATGTGGGATCTTAACAGATGATGGAATAGCCATAGAAGGTCCCGATTTTAGAGAGAAGACTCAGGAGGAAATGTTTGAACTGATTCCTAAAATTCAGGTTATGGCTAGATCCTCGCCATTAGATAAGCATACTTTGGTGAAACAATTGCGTACTACGTTTGGAGAAGTTGTAGCTGTAACTGGTGATGGAACAAATGACGCCCCTGCCCTTCATGAGGCAGACATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTTGCTAAAGAAAGCGCTGATATCATAATTATGGATGATAATTTCTCTACTATAGTGACAGTGGCAAAATGGGGACGTTCAGTTTACATAAACATTCAAAAATTTGTACAGTTTCAGCTGACAGTTAATGTGGTTGCCTTAATTGTGAACTTCAGTTCAGCATGCACAACAGGAAGTGCACCTCTCACAGCAGTTCAATTATTGTGGGTGAACATGATAATGGACACACTTGGAGCACTTGCGCTAGCAACTGAACCTCCGAACGATGAACTAATGAAGCGTTCACCGGTCGGAAGGCAAGGAAGTTTCATCAGCAATGTCATGTGGAGGAACATTTTAGGCCAATCTCTGTATCAAGTCCTGCTGATATGGATTCTTCAGGCCAAAGGGAAATGGATCTTTGGAATGAAGGGTCCAGATTCTGATATCTTGTTAAACACACTCATCTTCAACTCATTTGTCTTCTGTCAGGTTTTCAACGAGATAAGCTCACGAGAGATGGAGGAAATAGATGTATTTAAAGGCATATTGGATAATCATGTCTTCGTGGGGGTCATAAGTGTCACTGTTCTGTTTCAGATCATAATTGTTGAGTACTTAGGAACCTACGCTAATACCACACCCCTTGCCCCTATTTACTGGTTGTTTAGCATTTTTGTTGGATATTTAGGCATGCCCATTGCCGCTCGCTTAAAGAAGATCCCTGTCTGA 3048 0.4177 METYLQENFEVKCKNSSEEVLQNWRKLCGIVKNPKRRFRFTANLSKRSEAAAMRRTNQEKLRVAVLVSKAAFQFIQGAQPSDYIVPEEVREAGFQICADELESIVEGHDINKLKYHGGVEGISEKLSTSTTDGISNDSDQLIKRLEIYGINKFTESESRSFWVFVFEALQDMTLMILGVCAVVSLIIGIATEGWPRGAHDGLGIVVSILLVVFVTATSDYRQSLQFKDLDKEKKKIYVQVTRNGYREKMSIYDLITGDIVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVNSQNSFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKMGLFFAVITFVVLMKGLMARKRQEGRFWSVSGDDAMEMLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLTTNRMTVVKTCICMNIKEVTNEEQQTDKLLPDSALKLLLESIFNNTGGEVVAKRKSKRKREILGTPTEAAILEYGLSLGGDFQKEREAYKIVKVEPFNSEKKRMGVVLELPEGNLRAHCKGASEIVLAACDKVIDSNGEVVPIDAEKSNFLKETIHSFACEALRTLCLAYMELEDGFSAEDPIPSSGYTCVGIVGIKDPVRPGVKESVTICRKAGVTVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKTQEEMFELIPKIQVMARSSPLDKHTLVKQLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADIIIMDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFSSACTTGSAPLTAVQLLWVNMIMDTLGALALATEPPNDELMKRSPVGRQGSFISNVMWRNILGQSLYQVLLIWILQAKGKWIFGMKGPDSDILLNTLIFNSFVFCQVFNEISSREMEEIDVFKGILDNHVFVGVISVTVLFQIIIVEYLGTYANTTPLAPIYWLFSIFVGYLGMPIAARLKKIPV 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1872 1015 Gene3D - 138 335 - -
Acco12g1872 1015 SUPERFAMILY Calcium ATPase, transduction domain A 236 332 IPR008250 -
Acco12g1872 1015 SUPERFAMILY HAD-like 451 859 IPR036412 -
Acco12g1872 1015 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Acco12g1872 1015 FunFam Calcium-transporting ATPase 16 76 - -
Acco12g1872 1015 SFLD C1.7: P-type atpase like 434 806 - -
Acco12g1872 1015 Gene3D - 167 1001 - -
Acco12g1872 1015 SUPERFAMILY Calcium ATPase, transmembrane domain M 115 1014 IPR023298 -
Acco12g1872 1015 FunFam Calcium-transporting ATPase 647 799 - -
Acco12g1872 1015 PRINTS H+-transporting ATPase (proton pump) signature 786 811 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Acco12g1872 1015 PRINTS H+-transporting ATPase (proton pump) signature 610 628 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Acco12g1872 1015 PRINTS H+-transporting ATPase (proton pump) signature 754 770 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Acco12g1872 1015 SMART Cation_ATPase_N_a_2 113 189 IPR004014 -
Acco12g1872 1015 Pfam Cation transporter/ATPase, N-terminus 115 184 IPR004014 -
Acco12g1872 1015 Pfam Cation transport ATPase (P-type) 511 592 - -
Acco12g1872 1015 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 458 663 IPR023299 GO:0000166
Acco12g1872 1015 NCBIfam calcium-translocating P-type ATPase, PMCA-type 108 1015 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Acco12g1872 1015 SFLD p-type atpase 434 806 IPR044492 -
Acco12g1872 1015 PRINTS P-type cation-transporting ATPase superfamily signature 283 297 - -
Acco12g1872 1015 PRINTS P-type cation-transporting ATPase superfamily signature 651 662 - -
Acco12g1872 1015 PRINTS P-type cation-transporting ATPase superfamily signature 673 683 - -
Acco12g1872 1015 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Acco12g1872 1015 PRINTS P-type cation-transporting ATPase superfamily signature 754 773 - -
Acco12g1872 1015 PRINTS P-type cation-transporting ATPase superfamily signature 778 790 - -
Acco12g1872 1015 Gene3D - 16 76 - -
Acco12g1872 1015 Pfam Cation transporting ATPase, C-terminus 839 1012 IPR006068 -
Acco12g1872 1015 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Acco12g1872 1015 FunFam Calcium-transporting ATPase 462 658 - -
Acco12g1872 1015 PANTHER CATION TRANSPORTING ATPASE 58 1014 - -
Acco12g1872 1015 NCBIfam HAD-IC family P-type ATPase 547 699 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Acco12g1872 1015 NCBIfam HAD-IC family P-type ATPase 724 834 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Acco12g1872 1015 NCBIfam HAD-IC family P-type ATPase 392 474 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Acco12g1872 1015 Pfam E1-E2 ATPase 235 430 - -
Acco12g1872 1015 CDD P-type_ATPase_Ca_PMCA-like 143 887 - -
Acco12g1872 1015 FunFam Calcium-transporting ATPase 771 1015 - -
Acco12g1872 1015 FunFam Calcium-transporting ATPase 215 335 - -
Acco12g1872 1015 Gene3D - 462 658 IPR023299 GO:0000166
Acco12g1872 1015 Gene3D - 449 799 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1872 Acco-ChrAcco12 30087761 30092367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1872 1 1015 Primary Pumps ATPases AT4G37640 80.217 0.0 1690