Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1808 ATGGGGAGGGCTCCTTGCTGCGACAAAGCCAACGTCAAGAAAGGGCCATGGTCGCCGGAGGAAGACTCCAAACTCAAAGCTTACATCGAACAGAACGGCACGGGCGGCAACTGGATAGCCCTTCCTCAAAAGATAGGACTTAGGAGGTGTGGGAAAAGCTGTCGCCTGCGATGGTTGAATTATCTTCGTCCCAACATAAAGCATGGTGGTTTCTCAGAAGATGAAGACAACATAATTTGCAGCCTCTATGTTAGTATTGGAAGCAGGTGGTCTATAATAGCAGCGCAATTACCAGGAAGAACCGACAATGACATTAAGAACTACTGGAACACCAGGCTCAAGAAGAAACTACTGGGTAAACAGCGAAAGCAACAAGAAGCCCAAGCTCACAGAGCTAATAATAACACGATGATCAAGCAAGAACTTATTAAGAGACACACTAATAATAATTTGGTACTCATGAACCAAACTACTAATCCTCCTTTGTCTTCGCTTTATCAGACTACTTGTGCAAGTTCTTCAATCCAAGAGCCCTACGATGTCAACAATCTGAGAAACCCTTTATATGAATGTGACCCATTCTTCTTCCAACAAGACCAGCTATGTCCAGTGATAAACGATTGCAGTACTTCTAACATTAATGTTTTTGAAGGATTTCAAGCTCAAAACTTATTGCCGAGTAATAATGATTTGATGAGCCAGATGGGCTTTAATGTGAACACTACACAGCAAATGGATGGATTTCAGAGCTTCAGTGGAGGAGGAGTAATGGAGTCGTCGTCGACGGCGACTACTTCGACGGAAAGTAGCAGTTGGGCAGACTTGAGCTCTCTTCTTAATTACTCTCCGAACAATATGGTTTCCAAGTACCAAGAAATAATGTTGCCTCAAGAATATGTTAATGCTTTCGAGGAGCCTTCCTTCTTTGGACGCAATAACATCTCTTCTGTACATGACATGGTCTGA 966 0.4317 MGRAPCCDKANVKKGPWSPEEDSKLKAYIEQNGTGGNWIALPQKIGLRRCGKSCRLRWLNYLRPNIKHGGFSEDEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKQQEAQAHRANNNTMIKQELIKRHTNNNLVLMNQTTNPPLSSLYQTTCASSSIQEPYDVNNLRNPLYECDPFFFQQDQLCPVINDCSTSNINVFEGFQAQNLLPSNNDLMSQMGFNVNTTQQMDGFQSFSGGGVMESSSTATTSTESSSWADLSSLLNYSPNNMVSKYQEIMLPQEYVNAFEEPSFFGRNNISSVHDMV 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1808 321 FunFam Transcription factor RAX3 7 68 - -
Acco12g1808 321 FunFam Transcription factor MYB36 70 140 - -
Acco12g1808 321 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Acco12g1808 321 CDD SANT 71 113 IPR001005 -
Acco12g1808 321 PANTHER OS09G0431300 PROTEIN 1 274 - -
Acco12g1808 321 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Acco12g1808 321 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Acco12g1808 321 Gene3D - 70 143 - -
Acco12g1808 321 Gene3D - 7 68 - -
Acco12g1808 321 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Acco12g1808 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Acco12g1808 321 Coils Coil 115 135 - -
Acco12g1808 321 CDD SANT 16 62 IPR001005 -
Acco12g1808 321 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Acco12g1808 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Acco12g1808 321 SMART sant 13 64 IPR001005 -
Acco12g1808 321 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1808 Acco-ChrAcco12 29311190 29312575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1808 1 279 MYB Transcription Factor Family AT3G49690 49.180 2.50e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco12g1808 Myb_DNA-binding 8e-13 CL0123