Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1802 ATGGCTCTTCCTTCTGATTCTACTTCCTCAGACCTCCAGCTTGTTCTAGGGCTTGGCTCTGATACCACCGCTACTCCCAAGAAACCTTCCTCTAATCTCACTGTTACTAGTGGTGTGTGTGAGCCGTCCTTGACGTTGGCTCTCTCTGCAGACCACACTAATGATTACCTTGTTCCCAAGAAGATTGATGTGAAAGTCAAAGCTGCTAATTGTTGTGAGGAAACACCTCTTGATCACTTGTGTCGCCAGAATTCTTCGCCTCACAGTGTGGTCTCCTCCTTCTCCAGTGGGAGGGTCAAGAGGGAGAGGGATCTCGGAAGCGAGGAGGCCGAGGCCGAGAGGCTTTCTTCCAGAGTCAGTGATGAAGACGAAGATGGCTCTAATGCTAGGAAGAAGCTCCGTCTCACCAAAGAACAGTCTGCTCTCCTTGAAGAAAGCTTCAAACAGCACAGCACACTCAACCCTAAGCAAAAGCAGGCCTTAGCCAGGCAGTTAAATCTACGGCCTCGCCAGGTTGAAGTTTGGTTCCAGAATCGAAGAGCCAGAACAAAGCTGAAGCAAACGGAGGTGGACTGCGAGTTCTTGAAGAAATGTTGTGAGACGCTGACGGATGAGAACAGGAGGCTCCAGAAGGAGCTGCAGGAGCTGAAGGCGCTGAAGCTATCTCAACCGTTGTACGTGCCGATGACGGCGGCCACTCTCACCATGTGCCCGTCCTGCGAGAGGCTGGCCGGCGTCGGCGACGGTGGATCCAACAATAAGATCCCATTCTCCCTGACTCCCAAGGCCACTCATCACCTCTACAACCCCTTCAACAATCCTTCAGCAGCATGTTGA 837 0.5221 MALPSDSTSSDLQLVLGLGSDTTATPKKPSSNLTVTSGVCEPSLTLALSADHTNDYLVPKKIDVKVKAANCCEETPLDHLCRQNSSPHSVVSSFSSGRVKRERDLGSEEAEAERLSSRVSDEDEDGSNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLSQPLYVPMTAATLTMCPSCERLAGVGDGGSNNKIPFSLTPKATHHLYNPFNNPSAAC 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1802 278 MobiDBLite consensus disorder prediction 97 133 - -
Acco12g1802 278 CDD homeodomain 130 187 IPR001356 GO:0003677
Acco12g1802 278 ProSitePatterns 'Homeobox' domain signature. 161 184 IPR017970 GO:0000981|GO:0006355
Acco12g1802 278 SMART HOX_1 128 190 IPR001356 GO:0003677
Acco12g1802 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 12 248 - -
Acco12g1802 278 Pfam Homeodomain 130 184 IPR001356 GO:0003677
Acco12g1802 278 MobiDBLite consensus disorder prediction 82 133 - -
Acco12g1802 278 MobiDBLite consensus disorder prediction 82 96 - -
Acco12g1802 278 FunFam Homeobox-leucine zipper protein 18 116 191 - -
Acco12g1802 278 Pfam Homeobox associated leucine zipper 186 220 IPR003106 GO:0006355|GO:0043565
Acco12g1802 278 SUPERFAMILY Homeodomain-like 120 187 IPR009057 -
Acco12g1802 278 Coils Coil 192 222 - -
Acco12g1802 278 ProSiteProfiles 'Homeobox' domain profile. 126 186 IPR001356 GO:0003677
Acco12g1802 278 Gene3D - 123 191 - -
Acco12g1802 278 SMART halz 186 229 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1802 Acco-ChrAcco12 29241002 29242107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1802 9 278 Homeobox Transcription Factor Family AT4G37790 59.450 1.42e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco12g1802 Homeodomain 1.7e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1970 11 33958736 33959908 Acco12g1802 12 29241002 29242107 CCT