Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1785 ATGTATGCGCACAAAGGCTTAAAAAATAAATTTGCTTTGAGTGCCTATGAAGGGGAAAGAAGTTCTCGAGAGAAGCAAGTTGTGCAGTCAGGGATATTACAAAGGCACCAAATGGAATCGATGGAGGAAATATCATGGGAAAGATTGTTGCAGGATTTGGAAATAGCTGGTGATGATTTCAGTTTTGCTTTTGAGGCTCATGATCAATTATTTAGCAGTCCATCACAAGAAAACTTTGAAAGTTGTTGGAATAATGATGATAATAATACAGATACTACCTTGAACGCTGAAAATGGCATCATCCTCACGAGCAATAATCCTTCGACTTCAGAATCTGTAGTCAACACCCAACATCTCACGGTGGCTAATTCCCATGATTATTCTGTCTTCATGGCACAAGACAGGTCTTATTCTTTTGATGATGCTTCAAAGTGGTACTTGCAGAGTCAAACAAATATTAAAGAAACAGACAGGAGGCCAGAGGGTAGAAATTCACGAGTACAAGATCACTTACTTGCTGAGAGAGCCAGGAGAGGAAAGATCTCCCAACACTTCATTGCCCTTTCAGCCCTAATTCCTGGACTCAAAAGGACGGATAAGGCATCTTTGTTGGAGGGAGCTATAAGGCACGTGAAGCAGCTTCAAGAGCAAGTGAAATCACTGGAACAACAGACCAAGAAGAAGAAAACTGGTGAATCTGTGGTGTTTCTGAAGAAGTCTCAGCTGACATCTACTACGGACACGACGTCGTTTAATAATAATTCATCAGACATTGAAAACTTGGATGATGGCTCAAAATGGAATAGCAGAGTAGCAGAAGCAGATGTTGAAGCAACGGTTTCAGAAAAGAAGGTGTTGATTAGAGTGCAATGTGAGAAAAAAGAAGGAATAATGGTGAAGACAATGAAGGAGATACAAAAACTCCACTTGTCTGTGATAAATAGTAGTGTGATGCCATTTGGGAGATCCATTCTAGACATCACTATCATAGCTGAGATGGAAGATGAGTTCAACTTGAGCAGCAAAGAGCTCGCTAGAAATCTCAGGGTGGCACTCTTACAATCAACATAA 1071 0.4052 MYAHKGLKNKFALSAYEGERSSREKQVVQSGILQRHQMESMEEISWERLLQDLEIAGDDFSFAFEAHDQLFSSPSQENFESCWNNDDNNTDTTLNAENGIILTSNNPSTSESVVNTQHLTVANSHDYSVFMAQDRSYSFDDASKWYLQSQTNIKETDRRPEGRNSRVQDHLLAERARRGKISQHFIALSALIPGLKRTDKASLLEGAIRHVKQLQEQVKSLEQQTKKKKTGESVVFLKKSQLTSTTDTTSFNNNSSDIENLDDGSKWNSRVAEADVEATVSEKKVLIRVQCEKKEGIMVKTMKEIQKLHLSVINSSVMPFGRSILDITIIAEMEDEFNLSSKELARNLRVALLQST 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1785 356 Gene3D - 162 234 IPR036638 GO:0046983
Acco12g1785 356 SMART finulus 171 220 IPR011598 GO:0046983
Acco12g1785 356 PANTHER BHLH TRANSCRIPTION FACTOR 56 354 - -
Acco12g1785 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 214 IPR011598 GO:0046983
Acco12g1785 356 Pfam Helix-loop-helix DNA-binding domain 168 215 IPR011598 GO:0046983
Acco12g1785 356 Coils Coil 204 231 - -
Acco12g1785 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 228 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1785 Acco-ChrAcco12 29007710 29011752 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1785 152 352 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.098 9.18e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco12g1785 HLH 8.3e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco12g1785 12 29007710 29011752 Acco12g1785 12 29007710 29011752 ECH