Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1773 ATGCCAGTTCCACTTGCCCCTTACCCCACACCCCCAGCTCCGTATACGCCTCCAGCTAATGGAGGTACACAACAGAGTCAGCTTGTGTGTTGTGGGTGTAGAAACCTTCTTCTCTATCCAGTTGGAGCAACATCTGTGTGCTGCGCTGTTTGCAATGCAGTCACTGCAGTGCCACCTCCTGGCACAGAAATGGCTCAGTTGGTTTGCGGAGCCTGCCACACATTACTCATGTACATACGAGGGGCAACGAGCGTGCAATGCTCCTGCTGTCACATTGTAAATCTAGCTTTGGAAGCAAATCAGGTGGCTCATGTCAATTGTGGCAACTGTAGGATGCTACTGATGTATCAATATGGAGCAAGATCTGTTAAATGTGCAGTCTGCAATTTTGTAACATCTGTTGGGGCCTCAGCAAGTACAGTTGAGCAGAAGTTCAGCGCCTAA 444 0.4932 MPVPLAPYPTPPAPYTPPANGGTQQSQLVCCGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGACHTLLMYIRGATSVQCSCCHIVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTVEQKFSA 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1773 147 Pfam LSD1 zinc finger 69 93 IPR005735 -
Acco12g1773 147 Pfam LSD1 zinc finger 30 54 IPR005735 -
Acco12g1773 147 Pfam LSD1 zinc finger 107 131 IPR005735 -
Acco12g1773 147 NCBIfam zinc finger domain, LSD1 subclass 104 134 IPR005735 -
Acco12g1773 147 NCBIfam zinc finger domain, LSD1 subclass 27 57 IPR005735 -
Acco12g1773 147 NCBIfam zinc finger domain, LSD1 subclass 66 95 IPR005735 -
Acco12g1773 147 PANTHER PROTEIN LSD1 16 57 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1773 Acco-ChrAcco12 28867520 28869445 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Acco12g1773 zf-LSD1 6.4e-09 No_clan