Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1739 ATGCATCAACAGCAACTTCAATTATTTCTGCTTTGCGTTCTGTCTCATATTTACTATCCAAACATGTCTCTCTCTGCTGCTTTGTGTTCTCTTGTTCTCACCACCGCCTTGCTAATTTTCATGCAAAATCTGGCAATCGACGCTGCGTGTTCCGATTGTTTTGTATCTTCTCGAGCAACCTATTACCCAAACTCCGATGAAAATGGAACAGATGTAGGTGCATGTGGGTTTGGTTCCTTTGGTGCTACCGTCAATGGCGGGGACGTCTCAGCTGCTTCTAGTCTCTATCGTGGTGGTCTCGGCTGTGGTGCCTGTTACCAGGTGAGGTGTACGAACAGTGCTTATTGCTCAGACAAAGGAGCGACGATAGTGATAACGGACCAGGGTGCAGGTGCTGGCACAGATTTCATTCTTAGTAAACGAGCCTTCTCTCACATGGCTCAGACCAGTGATGCTGCTGCCACTTTGTTGGCTTATGGCGTCGTTGATATTCAATACAGAAGAGTTTCATGTAGCTACCCATACAAAAATATCACTATTAAGATACATGAGGGCAGCAGCAACCCTAATTACTTGGCCTTCGTCATAGAGTACCAACAAGGCAAGAGAGATATCACTGCTGTGCAGCTCTGTGAGACGCAGAACTTTGCGTGCAAGTTGCTGAGTAGGAGTTTTGGAGCTGTGTGGACAGTGAACTCTCCTCCAAGTGGACCATTATCAGTGAGGATGTTGTTTAGTGATGAAGATGGAGAAGACACGTGGGTTGTTCCTGTGAATAACATTCCTCAAGATTGGAAAGCTGGAGAAAGCTATGATTCTGGAGTTCAAGTGAATCAATAG 840 0.4571 MHQQQLQLFLLCVLSHIYYPNMSLSAALCSLVLTTALLIFMQNLAIDAACSDCFVSSRATYYPNSDENGTDVGACGFGSFGATVNGGDVSAASSLYRGGLGCGACYQVRCTNSAYCSDKGATIVITDQGAGAGTDFILSKRAFSHMAQTSDAAATLLAYGVVDIQYRRVSCSYPYKNITIKIHEGSSNPNYLAFVIEYQQGKRDITAVQLCETQNFACKLLSRSFGAVWTVNSPPSGPLSVRMLFSDEDGEDTWVVPVNNIPQDWKAGESYDSGVQVNQ 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1739 279 Pfam Lytic transglycolase 92 166 IPR009009 -
Acco12g1739 279 PANTHER EXPANSIN-B3 37 276 - -
Acco12g1739 279 Pfam Expansin C-terminal domain 178 258 IPR007117 -
Acco12g1739 279 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 72 176 IPR007112 -
Acco12g1739 279 Gene3D - 42 172 IPR036908 -
Acco12g1739 279 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 190 273 IPR007117 -
Acco12g1739 279 SUPERFAMILY PHL pollen allergen 176 273 IPR036749 -
Acco12g1739 279 Gene3D - 175 277 IPR036749 -
Acco12g1739 279 SUPERFAMILY Barwin-like endoglucanases 44 174 IPR036908 -
Acco12g1739 279 PRINTS Expansin/Lol pI family signature 159 175 IPR007118 GO:0005576
Acco12g1739 279 PRINTS Expansin/Lol pI family signature 218 232 IPR007118 GO:0005576
Acco12g1739 279 PRINTS Expansin/Lol pI family signature 92 110 IPR007118 GO:0005576
Acco12g1739 279 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576
Acco12g1739 279 PRINTS Expansin/Lol pI family signature 53 68 IPR007118 GO:0005576
Acco12g1739 279 CDD DPBB_EXLB_N 55 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1739 Acco-ChrAcco12 28622865 28624936 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1739 37 275 Expansin Gene Family AT4G17030 42.975 1.08e-62 196