Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1693 ATGGCCCACTCACTTAGGCAAAGAAAGCAAAGCACTAATTATGCAGATTCAGCCAGTCCTGGAAGTGATTCAATTGGTTCTGATGCAGACTGCTTATCAAGGACCTCTAATAGACGAAAAAAGAGAAGGAACATGACATTATGCTCTACAACTACAAAGAAGACTAAAACAGCAAGTTCAAGTGTAACTTTGACTGCAAGACGTCGACGAGGTCATACCTCAAAGAAGAGGGTTCAGGAAGTACAAAACAAGGAAGCCAGTGAACCTACAAGTTCAAACAAGAAATATGGAACATATTGTGCTGACCAATTAAGTTCAAACAAAACAACCATTTTATCATGGTTGATAGATTGCAATGTTATCAAGAAGGGTGAGCATGTCACCCACTCAAATGAAATAAAGGACAATCCAGCTAAGATAGGAAAAATTGCCAGAGGTGCAATTCTCTGCAGCTGTTGCCAGAGGGAATATTCTGTGTGGGGCTTTGAGAAACATTGTGAAAGTGATCTTAAACAGCCCTATCAAGATATTCACCTCCTTGAAAAACGAGAATCACTTCTGGAGTTTATAAAGATTGCTTGGCAGGAGAACGGTGAACTGAAACACCTGGAAGCACAATCCTCTAAACGCACAAGAAATTCAAAAGACAACCATGACTTTGCTTGTCCTGTTTGTGGAGATGGGGGAGACTTGATCTGCTGTGACAAGTGCCTTGCAACATATCATCTAGACTGTTTGAATTTGGAGAGGCTTCCTGAAGGTGATTGGTTCTGTCCTTATTGCGTATGCAAACACTGTGGGCTTGGTGATAAAAGCAAGCAATTAATTGCATGCTTCCAATGTAACAAAAAATTTGAATGGGGATGCTTTAAGGAATTTGAGAAAGATGCTCTTGAAGATGCCTTAGACCCTAACTGTTCGCGTTTATATTGTAGGCAAAGTTGTAGGAAGGCCTATGAGATATTGGAGGCTTTTGTTGGGGTTAGGAACGAAATCACTGGAAGCTACACTTGGAGAGTTATTCGTCAAATGGATAGGACATCAACTGTCTCTGAACTCCAATATTTTGAAAATAATGTCAAGGTTGCAATTATGTGGAAATTAATGAATGAAGCTTTTGTGCCAATAGTTGACAGATACTCAGGCCACAATGTGGTTCAAAGTGTACTATACAGTCTTGGAGCAGAATTACCCAGGATTGATTACAGCCGTTTCTATACATTTATACTGGAAAAAGATGATGAGGTTGTCTCTGCTGCTTCTGTGAGAGTCCATGGGCAGAGGCTTGCAGAAATGCCCTTTATGGCCACACATAAAAATTATCAAAGAAAAGGATACTGCGGATACCTTTTGGTCATTGTGGAATCGGTCCTTCGCCATCTCTCAGTTCAAAGCTTAATAATCCCGGCAATTCCAGAGTGCGCCCGCATGTGGAGGGATAAGTTTGGGTTTAGTGATCTGAATACAGAGCTGAAAAGTGAACTAGCCTCCTTCAACATTTTGATGTTTTTGGAATCTCTATTACTGGTCAAGGACTTAAAAAGGCAGACTGCAGAATCTGATAGCGGTGACCGATCCGTTCTAGACCTCAACATGCCCCCTCCTGAAGGATGCACGAGGGCTGTGGAAGATGATGCATAG 1641 0.4144 MAHSLRQRKQSTNYADSASPGSDSIGSDADCLSRTSNRRKKRRNMTLCSTTTKKTKTASSSVTLTARRRRGHTSKKRVQEVQNKEASEPTSSNKKYGTYCADQLSSNKTTILSWLIDCNVIKKGEHVTHSNEIKDNPAKIGKIARGAILCSCCQREYSVWGFEKHCESDLKQPYQDIHLLEKRESLLEFIKIAWQENGELKHLEAQSSKRTRNSKDNHDFACPVCGDGGDLICCDKCLATYHLDCLNLERLPEGDWFCPYCVCKHCGLGDKSKQLIACFQCNKKFEWGCFKEFEKDALEDALDPNCSRLYCRQSCRKAYEILEAFVGVRNEITGSYTWRVIRQMDRTSTVSELQYFENNVKVAIMWKLMNEAFVPIVDRYSGHNVVQSVLYSLGAELPRIDYSRFYTFILEKDDEVVSAASVRVHGQRLAEMPFMATHKNYQRKGYCGYLLVIVESVLRHLSVQSLIIPAIPECARMWRDKFGFSDLNTELKSELASFNILMFLESLLLVKDLKRQTAESDSGDRSVLDLNMPPPEGCTRAVEDDA 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1693 546 PANTHER PHD FINGER PROTEIN 12 52 524 IPR042163 GO:0003714|GO:0045892
Acco12g1693 546 Gene3D - 398 499 - -
Acco12g1693 546 MobiDBLite consensus disorder prediction 523 546 - -
Acco12g1693 546 CDD NAT_SF 408 468 - -
Acco12g1693 546 MobiDBLite consensus disorder prediction 1 32 - -
Acco12g1693 546 Pfam PHD-finger 222 263 IPR019787 -
Acco12g1693 546 SUPERFAMILY FYVE/PHD zinc finger 205 263 IPR011011 -
Acco12g1693 546 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 306 IPR013083 -
Acco12g1693 546 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 395 487 IPR016181 -
Acco12g1693 546 ProSiteProfiles Zinc finger PHD-type profile. 219 264 IPR019787 -
Acco12g1693 546 SMART PHD_3 221 262 IPR001965 -
Acco12g1693 546 Pfam Tify domain binding domain 141 189 IPR032308 -
Acco12g1693 546 CDD PHD2_CHD_II 222 261 - -
Acco12g1693 546 MobiDBLite consensus disorder prediction 1 92 - -
Acco12g1693 546 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 364 514 IPR000182 GO:0016747
Acco12g1693 546 MobiDBLite consensus disorder prediction 48 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1693 Acco-ChrAcco12 27946269 27949690 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1693 106 543 PHD Transcription Factor Family AT1G05380 37.004 1.22e-90 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Acco12g1693 TDBD 1.8e-10 No_clan