Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1681 ATGCTCTCAAATCACGATTTTGGCCTAAATCTAAGCTTGAGCTTCCCTCACTCCGTTTCTAATCCTAGCAAATCTTCAGATCGGTGTTCTGAAGGAGGCAGAGGTGAAGCTCGGCCGTCTCTCAGAGGAATCGACGTGAATCGATTGCCGTCGGAGGTCGATTGTGAGGAGGAGGCGGGGATTTCGTCTCCGAATAGCACGATCTCGAGCGTGAGCGGTAAGCGAAGCGAGAGAGATCCGGCTAACAGTAGCGAAGAGAACGACACAGATCGAGCTTATTCTCGAGGAATCAGCGATGACGAAGACAACGAAACTTGCAGAAAGAAACTCAGGCTCTCCAAAGATCAGTCCGCTATTCTCGAAGAGAGCTTCAAGGAGCACAGTACTCTCAATCCCAAGCAAAAGCTGGCTCTGGCGAAGCAGCTAGGACTTAGACCTCGGCAAGTGGAGGTTTGGTTCCAGAACAGAAGAGCAAGGACGAAGCTGAAGCAAACGGAGGTGGACTGTGAGTTCTTGAAGAGGTGTTGTGAGAATCTGACGGAGGAGAACAGGCGGTTGCAGAAGGAGGTACAGGAGCTGAGAGCACTGAAACTTTCCCCACAACTGTATATGCACATGACCCCACCCACTACTCTCACCATGTGCCCATCTTGTGAGAGGTTCGGTGGTCGGCCCATTTCTATCGGCCCATGGTCTGTTCCTCAGCCCAACTCGCATCTTGTTCGTCCAAGGTCGTGA 738 0.5176 MLSNHDFGLNLSLSFPHSVSNPSKSSDRCSEGGRGEARPSLRGIDVNRLPSEVDCEEEAGISSPNSTISSVSGKRSERDPANSSEENDTDRAYSRGISDDEDNETCRKKLRLSKDQSAILEESFKEHSTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMTPPTTLTMCPSCERFGGRPISIGPWSVPQPNSHLVRPRS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1681 245 ProSiteProfiles 'Homeobox' domain profile. 103 163 IPR001356 GO:0003677
Acco12g1681 245 Pfam HD-ZIP protein N terminus 25 79 IPR006712 GO:0005634
Acco12g1681 245 MobiDBLite consensus disorder prediction 78 105 - -
Acco12g1681 245 Coils Coil 162 199 - -
Acco12g1681 245 ProSitePatterns 'Homeobox' domain signature. 138 161 IPR017970 GO:0000981|GO:0006355
Acco12g1681 245 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 8 222 - -
Acco12g1681 245 MobiDBLite consensus disorder prediction 1 105 - -
Acco12g1681 245 Pfam Homeodomain 107 161 IPR001356 GO:0003677
Acco12g1681 245 SMART HOX_1 105 167 IPR001356 GO:0003677
Acco12g1681 245 FunFam Homeobox-leucine zipper protein 18 94 168 - -
Acco12g1681 245 Gene3D - 111 161 - -
Acco12g1681 245 MobiDBLite consensus disorder prediction 60 77 - -
Acco12g1681 245 MobiDBLite consensus disorder prediction 1 28 - -
Acco12g1681 245 SUPERFAMILY Homeodomain-like 96 164 IPR009057 -
Acco12g1681 245 PRINTS Lambda-repressor HTH signature 143 159 IPR000047 GO:0003677
Acco12g1681 245 PRINTS Lambda-repressor HTH signature 134 143 IPR000047 GO:0003677
Acco12g1681 245 SMART halz 163 206 IPR003106 GO:0006355|GO:0043565
Acco12g1681 245 Pfam Homeobox associated leucine zipper 163 197 IPR003106 GO:0006355|GO:0043565
Acco12g1681 245 CDD homeodomain 107 164 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1681 Acco-ChrAcco12 27803648 27804781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1681 1 231 Homeobox Transcription Factor Family AT5G47370 60.687 7.15e-97 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco12g1681 Homeodomain 6.6e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1819 11 32558157 32559543 Acco12g1681 12 27803648 27804781 CCT