Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco12g1649 | ATGGCGGAGAAGCACAAATGCAAGCTCTGTTCCAGAACCTTTGCTCATGGCAGATCACTCGGCGGCCACATGAAGGCCCATTTCGCCACCCTCCCTCTTCCACCCAAGCCTCAATTACCACCACCACCACCACCACCATCGCCGCCGTCACCTTCATTCTCATCTTCTTCCTCACAAGATTCCGACGAGAAAGCTCTGATTTATACTCTCAGGGAAAATCCCAAGAAAAGTTTCAAGCTTGCAGATCCTGAATTCTCCGTCGTTGATACCACCGGCTCTGTTATTGTTCAGGACCGAGAAAGCGAGACCGAGTCAAAGAACCCAACTCGCCTTCGATCCAAGCGAGCCAGAACTCAGAGATTAACACCACCCAAGAAGCCTAAACCGAGTCTCTCCGAATCACCACCGGCGAGCTCTGTTTCTGAAACCAGCACTGAAGAAGATGTTGCTATGTGTCTCATTATGCTCTCCAGAGACAAATGGAAGAGAATCGCTGTAAAGAAAGAAGCAGCAGAAGAAGAAGATCGCGGAGGAGACGAGAAATTGAAGCGATTTGAGGAGATCAAGGTGAAGAAAGGAATTCGAGGGAAGCATCAGTGTGAGAAATGCAGAAAAACATTTCGATCGTTTCGAGCATTAGGGAGTCATAGAAACGTTTGTTTTGGCGATGAAGAAGAAGCTAGAAACGCCGGCAACAACAACACCAACACCAATCCGATTTTCGAATGCCCGTTTTGTTATAAGGTGTTCGGGTCGGGTCAAGCACTTGGTGGGCACAAGAGATCTCATTTGGTTCAATCTTCATCATCAACCATGAACCATTCTGCAACATTAATAATCAAAGAAAGCTTCATAGATCTCAACTTGCCAGCTCCATTAGCAGCAGCAGCAGAAGATGAACTCAGTGTGGTTTCTGATGCATAA | 924 | 0.4708 | MAEKHKCKLCSRTFAHGRSLGGHMKAHFATLPLPPKPQLPPPPPPPSPPSPSFSSSSSQDSDEKALIYTLRENPKKSFKLADPEFSVVDTTGSVIVQDRESETESKNPTRLRSKRARTQRLTPPKKPKPSLSESPPASSVSETSTEEDVAMCLIMLSRDKWKRIAVKKEAAEEEDRGGDEKLKRFEEIKVKKGIRGKHQCEKCRKTFRSFRALGSHRNVCFGDEEEARNAGNNNTNTNPIFECPFCYKVFGSGQALGGHKRSHLVQSSSSTMNHSATLIIKESFIDLNLPAPLAAAAEDELSVVSDA | 307 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco12g1649 | 307 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 5 | 32 | IPR013087 | - | |
| Acco12g1649 | 307 | MobiDBLite | consensus disorder prediction | 33 | 52 | - | - | |
| Acco12g1649 | 307 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 241 | 268 | IPR013087 | - | |
| Acco12g1649 | 307 | SMART | c2h2final6 | 198 | 218 | IPR013087 | - | |
| Acco12g1649 | 307 | SMART | c2h2final6 | 241 | 263 | IPR013087 | - | |
| Acco12g1649 | 307 | SMART | c2h2final6 | 5 | 27 | IPR013087 | - | |
| Acco12g1649 | 307 | SUPERFAMILY | beta-beta-alpha zinc fingers | 4 | 30 | IPR036236 | - | |
| Acco12g1649 | 307 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 7 | 27 | IPR013087 | - | |
| Acco12g1649 | 307 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 198 | 225 | IPR013087 | - | |
| Acco12g1649 | 307 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 243 | 263 | IPR013087 | - | |
| Acco12g1649 | 307 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 1 | 307 | IPR044303 | GO:0006355 | |
| Acco12g1649 | 307 | SUPERFAMILY | beta-beta-alpha zinc fingers | 198 | 263 | IPR036236 | - | |
| Acco12g1649 | 307 | Gene3D | Classic Zinc Finger | 195 | 263 | - | - | |
| Acco12g1649 | 307 | MobiDBLite | consensus disorder prediction | 89 | 145 | - | - | |
| Acco12g1649 | 307 | Pfam | C2H2-type zinc finger | 198 | 217 | - | - | |
| Acco12g1649 | 307 | Pfam | C2H2-type zinc finger | 5 | 27 | - | - | |
| Acco12g1649 | 307 | Pfam | C2H2-type zinc finger | 241 | 263 | - | - | |
| Acco12g1649 | 307 | MobiDBLite | consensus disorder prediction | 29 | 73 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco12g1649 | Acco-ChrAcco12 | 27242835 | 27243758 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco12g1649 | 3 | 304 | C2H2 Transcription Factor Family | AT3G60580 | 36.697 | 3.07e-45 | 153 |
Transcription factors information