Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1579 ATGAGATCCTGGAAGCTCATCCCTTGCTCTTCACACTTGCTTTACACGCAGACCGCCACTCCATCCTTCACTCGCCAGATAAGCATGGATGCAAAGAGTGTTGCTTCTCAGCTTAAGAGTTCTGGTCTGTTGCGCACTCAGGGTCTTGTTGGAGGAAAATGGAGTGATTCCTATGATGGCAAAACCATAAAGGTTTACAATCCAGCAACTGGTGAATCTATAGCAGATATTGCATGCATGGGCAGAAGAGAGACAAATGATGCGATATCCTCAGCCTATGATGCATATCAATCTTGGAGCAAAACCACTGCAGCTGAGAGGAGCAAACTTCTGAGAAAATGGTATGATTTGCTAATGGCACACAAGGAAGAGCTTGCACAACTTATAACCTTAGAGCAAGGAAAGCCTCTTAAAGAATCTATTGGTGAGATAAATTATGGGGCTAGTTTTATTGAGTTTTCAGCGGAGGAGGCAAAGCGTGTATATGGAGATATAATTCCTGCACCACTATTTGATCGACGGCTATTCGTTTTAAAACAGCCTGTAGGGGTTGTTGGTGCTATCACACCTTGGAACTTTCCTTTGGCTATGATTACCCGGAAGGTTGGTCCAGCTCTTGCATGTGGCTGTACAGTGGTCGTTAAGCCCTCCGAACTTACTCCTCTCACAGCTTTGGCTTTAGCAGAGCTTGCAATTCAGGCTGGAATACCAGCGGGTGTCGTGAATGTAGTTATGGGGAATGCTCCTGAAATTGGTGATGCTATACTTGCAAGTCCACAGGTAAGGAAGATCACATTTACTGGCTCAACAGCAGTTGGCAAAAAGTTGATGGCAGGTGCTGCTGGAACAGTTAAAAGAGTATCTCTGGAACTTGGTGGCAATGCCCCTTGCATAATATTTGATGATGCTGATCTTGATGTGGCAGTAAAAGGAACTGTTGCAGCTAAGTTCCGTAATAGCGGACAAACATGTGTATGTGCAAATAGAATTCTTGTGCAAGAAGGTATATATGATAAATTTGCAACTGCTATCCTTGATGCTGTTAAGAATATGAAAGTTGGGGACGGTTTTAGTGAAGGTGTGGTTCAGGGACCTCTAATCAATGAAGCTGCAGTGGAAAAGGTTGAATCCTTACTTCATGATGCTACCTCTAAGGGAGCAAAAGTAATTCATGGGGGTAAACGACACAGCATTGGATTCACTTTTTATGAACCTACAGTCGTCACTGATGTCAATAATGAGATGCGCATTTCAAGGGAGGAAGTATTTGGACCAGTTGCTCCTCTTTTGAGATTTAAAACTGAGGAGGAGGCTATCAAAATCGCCAACGACACTAATGCAGGATTGGGTTCATATATATTTACAAACAGTGTTCAACGCTCTTGGCGTGTTGCCGAGGCTCTTGAATATGGACTTGTCGGTGTAAATGAAGGAGTAATTTCAACAGAGGTTGCTCCATTTGGCGGTGTTAAACAGTCCGGCCTTGGAAGAGAAGGCTCCAAATATGGAATGGATGAATATTTGGAGATCAAATATGTTTGCTTTGGAAACATGAGCAAAGAATGA 1566 0.433 MRSWKLIPCSSHLLYTQTATPSFTRQISMDAKSVASQLKSSGLLRTQGLVGGKWSDSYDGKTIKVYNPATGESIADIACMGRRETNDAISSAYDAYQSWSKTTAAERSKLLRKWYDLLMAHKEELAQLITLEQGKPLKESIGEINYGASFIEFSAEEAKRVYGDIIPAPLFDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVVKPSELTPLTALALAELAIQAGIPAGVVNVVMGNAPEIGDAILASPQVRKITFTGSTAVGKKLMAGAAGTVKRVSLELGGNAPCIIFDDADLDVAVKGTVAAKFRNSGQTCVCANRILVQEGIYDKFATAILDAVKNMKVGDGFSEGVVQGPLINEAAVEKVESLLHDATSKGAKVIHGGKRHSIGFTFYEPTVVTDVNNEMRISREEVFGPVAPLLRFKTEEEAIKIANDTNAGLGSYIFTNSVQRSWRVAEALEYGLVGVNEGVISTEVAPFGGVKQSGLGREGSKYGMDEYLEIKYVCFGNMSKE 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1579 521 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 39 518 - -
Acco12g1579 521 CDD ALDH_F5_SSADH_GabD 65 515 - -
Acco12g1579 521 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 317 328 IPR016160 GO:0016491
Acco12g1579 521 FunFam Succinate-semialdehyde dehydrogenase I 60 303 - -
Acco12g1579 521 FunFam Aldehyde dehydrogenase, putative 485 511 - -
Acco12g1579 521 NCBIfam succinate-semialdehyde dehydrogenase 65 511 IPR010102 GO:0009013|GO:0009450
Acco12g1579 521 PIRSF ALDH 70 520 IPR012394 GO:0006081
Acco12g1579 521 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 60 507 IPR016162 GO:0016491
Acco12g1579 521 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 289 296 IPR029510 GO:0016491
Acco12g1579 521 FunFam Succinate-semialdehyde dehydrogenase I 293 482 - -
Acco12g1579 521 Pfam Aldehyde dehydrogenase family 54 513 IPR015590 GO:0016491
Acco12g1579 521 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 293 482 IPR016163 GO:0016620
Acco12g1579 521 SUPERFAMILY ALDH-like 26 516 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1579 Acco-ChrAcco12 25805209 25819241 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1579 5 521 Aldehyde Dehydrogenase Gene Family AT1G79440 78.530 0.0 822