Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1543 ATGGAGGTCAGGGTTAATAGTGGGGTCACAGTGGTCCGATCAGATGCTCCGTTGAACTACCATGTAGCTCTGAGGACTGAAGCCCCGTCTTCCACCGGGGGATCAACGGCACCGACGCCTCAAAGGAGTGTTCCGCCATCTCAACCGCTTGCTATGGGTATGGCTCCGGCGACGACAACGATGCCGGTGAAGAAAAAGAGGGGTCGGCCGAGGAAGTACGGGCCAGACGGGTCAGTTGCTGTGGGTATGGCTCTGGCAGCGATAACGATGCCGGTGAAGAAAAAGAGTGGTCGGCCGAGGAAGTACGGACCAGACGGGTCAGTCATTACGATGGCTCTATCTCCGTCGTCAGCTCCGCCGGTAGTAATTGATTTCGCGACGGGGAAACGCGGTAAAGTGCGCTCTGCCAGCTCAGTACACAAAGCCAAATTCGAAGTTGAAAATTTAGGTGAATGGGCTGCAGGCTCCATTGGTACTAATTTTACGCCTCATATCATTACCATTAATTCTGGGGAGGACATCACTATGAAGATAATATCATTTTCCCAACAGGGGCTGCGAACTATATGCATTCTTTCTGCGACTGGAGTCATATCAAGTGTCATGCTTCAGCAGGCTGATTCTTTTGGGGGTACACTGACATATGAGGGACAGTTTGAAATTTTGTCATTATCTGGCTCATTCATGCCAAATGAAAGTGCAGGAACACGAAGCAGATCGGGTGGCATGAGCGTTTCTTTAGTGAGTCCAGAGGGACGTGTCATAGGAGGTAGTGTAGCTGGTTTGTTGGTTGCAGCAAGTCCTGTGCAGGTTGTGGTTGGCAGTTTTCTGGCGGGAAACCAGCATGATGTGAAGACAAAGAAACAGATACATGAGATTATATCAACAGCAACTGTTTCTTTGTCTGCTGCTGATCCAATACCTATCCTCTCATCTCCTCCTTCCTTCCCTTCTGATAATTGGTCTGCATTGCCTTCTGATATGAGGAACAACATGACCACTGACATTAATATGCCTCTTTCTTCTGAATATATATTTTCTGCTGACAAAAATAAAACCAATTCTATATAG 1071 0.4809 MEVRVNSGVTVVRSDAPLNYHVALRTEAPSSTGGSTAPTPQRSVPPSQPLAMGMAPATTTMPVKKKRGRPRKYGPDGSVAVGMALAAITMPVKKKSGRPRKYGPDGSVITMALSPSSAPPVVIDFATGKRGKVRSASSVHKAKFEVENLGEWAAGSIGTNFTPHIITINSGEDITMKIISFSQQGLRTICILSATGVISSVMLQQADSFGGTLTYEGQFEILSLSGSFMPNESAGTRSRSGGMSVSLVSPEGRVIGGSVAGLLVAASPVQVVVGSFLAGNQHDVKTKKQIHEIISTATVSLSAADPIPILSSPPSFPSDNWSALPSDMRNNMTTDINMPLSSEYIFSADKNKTNSI 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1543 356 SMART AT_hook_2 64 76 IPR017956 GO:0003677
Acco12g1543 356 SMART AT_hook_2 93 105 IPR017956 GO:0003677
Acco12g1543 356 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 90 311 IPR039605 GO:0003680
Acco12g1543 356 ProSiteProfiles PPC domain profile profile. 158 297 IPR005175 -
Acco12g1543 356 MobiDBLite consensus disorder prediction 28 54 - -
Acco12g1543 356 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 276 IPR005175 -
Acco12g1543 356 Gene3D - 163 297 - -
Acco12g1543 356 CDD DUF296 162 276 IPR005175 -
Acco12g1543 356 SUPERFAMILY AF0104/ALDC/Ptd012-like 160 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1543 Acco-ChrAcco12 25113080 25117130 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1543 6 338 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 52.793 4.91e-101 300