Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1521 ATGGATCGTACCTTCGTGGGCAACACGAAGGCATTTCGCACTGTGTATATAAGAATGCTTCATGTACAAGTCAATAACCATATCTACCATACAATCGCATTATATGCAAAAGCCTCAAACATGGCTTCCATTCTTCCCTTCGGTTGCTTCTTTTTACTTTCATGGATCCTCACAGTCATTGGAAACCCAGCCGCTGCCAACGGAGTGTTCCAACCGAAACCATGGGCTCTTGCTCACGCCACCTTTTATGGCGACGAGACAGCTTCTGCAACATTGGGAGGAGCATGTGGGTACGGGAACTTGTTCATGAACGGATACGGCACAGACACAGTAGCACTGAGCTCCACACTCTTCAACAATGGCTTCGCTTGCGGCACATGTTATCAAATCAAGTGCTACCAATCAAGCGCCTGTCACAAAGACGTCATGTTCACCACCGTGACGGCCACCAACCTCTGCCCACCAAACTGGGCCCAACCCTCTGACGATGGCGGCTGGTGCAACCCGCCACGCGTACATTTTGACATGGCAAAGCCAGCATTCATGAAAATAGCCGACTGGAATGCCGGCATTGTGCCGGTAATGTACCGGCGAGTTCCCTGCCAGAGGAACGGCGGGCTGAGATTCGCCTTCCAAGGGAACGGCTATTGGCTGCTTGTGTATGTTATGAATGTCGGTGGAGGAGGGGACATAGGAAACATGTGGGTGAAAGGAAGCAGAACGGGATGGATTTGTATGAGCCATAATTGGGGAGCTTCGTATCAAGCTTTTGCGACATTAGATGGACAAGATTTGTCGTTCAAGATAACGTCGTACACCACAAAACAGACTGTTATTGCTTGGAATGTTGCTCCTTCTGGTTGGTCTGTTGGTCTTACTTATTCCTCCAACGTTAACTTTCACTGA 906 0.4923 MDRTFVGNTKAFRTVYIRMLHVQVNNHIYHTIALYAKASNMASILPFGCFFLLSWILTVIGNPAAANGVFQPKPWALAHATFYGDETASATLGGACGYGNLFMNGYGTDTVALSSTLFNNGFACGTCYQIKCYQSSACHKDVMFTTVTATNLCPPNWAQPSDDGGWCNPPRVHFDMAKPAFMKIADWNAGIVPVMYRRVPCQRNGGLRFAFQGNGYWLLVYVMNVGGGGDIGNMWVKGSRTGWICMSHNWGASYQAFATLDGQDLSFKITSYTTKQTVIAWNVAPSGWSVGLTYSSNVNFH 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1521 301 SMART dpbb_1 110 196 IPR007112 -
Acco12g1521 301 PRINTS Expansin signature 145 155 IPR002963 GO:0009664
Acco12g1521 301 PRINTS Expansin signature 164 181 IPR002963 GO:0009664
Acco12g1521 301 PRINTS Expansin signature 217 238 IPR002963 GO:0009664
Acco12g1521 301 PRINTS Expansin signature 105 119 IPR002963 GO:0009664
Acco12g1521 301 PRINTS Expansin signature 282 298 IPR002963 GO:0009664
Acco12g1521 301 PRINTS Expansin signature 181 194 IPR002963 GO:0009664
Acco12g1521 301 PRINTS Expansin signature 205 217 IPR002963 GO:0009664
Acco12g1521 301 Pfam Lytic transglycolase 110 196 IPR009009 -
Acco12g1521 301 PRINTS Expansin/Lol pI family signature 114 132 IPR007118 GO:0005576
Acco12g1521 301 PRINTS Expansin/Lol pI family signature 92 110 IPR007118 GO:0005576
Acco12g1521 301 PRINTS Expansin/Lol pI family signature 282 296 IPR007118 GO:0005576
Acco12g1521 301 PRINTS Expansin/Lol pI family signature 74 89 IPR007118 GO:0005576
Acco12g1521 301 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Acco12g1521 301 PRINTS Expansin/Lol pI family signature 189 205 IPR007118 GO:0005576
Acco12g1521 301 Pfam Expansin C-terminal domain 208 285 IPR007117 -
Acco12g1521 301 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 216 296 IPR007117 -
Acco12g1521 301 SUPERFAMILY PHL pollen allergen 203 296 IPR036749 -
Acco12g1521 301 Gene3D - 206 301 IPR036749 -
Acco12g1521 301 SUPERFAMILY Barwin-like endoglucanases 74 224 IPR036908 -
Acco12g1521 301 Gene3D - 60 202 IPR036908 -
Acco12g1521 301 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 93 206 IPR007112 -
Acco12g1521 301 CDD DPBB_EXPA_N 74 201 - -
Acco12g1521 301 PANTHER EXPANSIN-A15 59 296 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1521 Acco-ChrAcco12 24670779 24672187 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1521 41 301 Expansin Gene Family AT1G12560 63.985 2.27e-122 349