Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1516 ATGGTGAGGGGGAAAACTCAGATGAAGCGAATTGAGAACGATACGAGCAGGCAAGTAACTTTCTCGAAGAGAAGGAATGGGCTGTTGAAGAAGGCGTTCGAGCTTTCTGTACTGTGTGATGCGGAAGTTGCCCTCATAATTTTCTCGCCCCGAGGAAAGCTCTATGAATTTTCCAGTTCTAGTACAAACAAAACAATTGAACGCTATCAAAAGAAAGTGAAGGACCTGGGTCTCTGCTCCGGAGGAATCCAAGATAACACACAGAATGGTGAGGATGGAATCATCAGCATACAAAAGAAGCTTGAGCATCTTGACATTTCTAGAAGGATGCTTTTGGGAGACTGTTTGGATGCATGTTCCGTTGAGGAGTTAAATCAGATGGAGAGCCAGCTGGAACGAAGCTTAACCAAAATTAGGGCACGAAAGAATCAATTGTTCAAGGAGGAGATTGAGCAACTAAGGGAAGAGGAAAAATGCCTCCTGGAAGAAAATAACAAGTTACGAGAGCAGTGTGGGATTGAAGAGCGTGGGTCAACGAGAAAAGAGGATGACAACGAGGTGGTGACGGAGTTGTTCATAGGGCCTCCGGAGAGACGAATCCCTTAA 606 0.4521 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSTNKTIERYQKKVKDLGLCSGGIQDNTQNGEDGIISIQKKLEHLDISRRMLLGDCLDACSVEELNQMESQLERSLTKIRARKNQLFKEEIEQLREEEKCLLEENNKLREQCGIEERGSTRKEDDNEVVTELFIGPPERRIP 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1516 201 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco12g1516 201 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 155 - -
Acco12g1516 201 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco12g1516 201 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco12g1516 201 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Acco12g1516 201 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco12g1516 201 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco12g1516 201 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco12g1516 201 SUPERFAMILY SRF-like 3 72 IPR036879 GO:0003677|GO:0046983
Acco12g1516 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco12g1516 201 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco12g1516 201 Gene3D - 13 77 IPR036879 GO:0003677|GO:0046983
Acco12g1516 201 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco12g1516 201 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977|GO:0045944
Acco12g1516 201 Coils Coil 121 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1516 Acco-ChrAcco12 24540972 24550246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1516 1 199 MADS-box Gene Family AT4G22950 60.190 4.34e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco12g1516 K-box 3.3e-23 No_clan