Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1482 ATGAATACTGACGAATTCACATCCTCTTCAGGCTTTGGCATCATGCCAAAGAAGCATTGGCCAGAGAGATTAAAATGCTCTTGGACTGAGACTGATCTTCATTTCAGGAATCATTCAGCGGAAACTCTGTACGGTTGGAAGAAGCACAAAATTATTGGTCAAAGAGTTCCTGAGCTCTTAATCACTGAAGAATATCATGCACCTTCACAGAAAATTCTGAAAAGGTTGACCTCTGGTTTGCCATGGTCAGCGCAGTTTCCTTTTAAGAAGAAGGCCAGTGAATTATTTATGGCCATGGTGACAAAATCTCCTCTTTTTGAGGCTGGCGAAATCACTGGTGTCATCACAGTTTCAAGTGATGCAGCCTTATTTAATTGTATAGGTTCTGAAAATATGAGAACTAACTGCGAGAAATCCGGTGCTAATGGAGCATCTGGAGTACAGGGGCTAAACTTCAAGAGGATACACTGGCATCCACCGCCATTGATTGCACCAGTGCCACAGGTTGCATCATCTGTTTCCAATTTGGTTCTGACAAATGATACATGCAATGTTAGCATGGGTTCCAGGGATACGTCAACACATGAGGAAGTTGATAAACTTGAGAAGTTACAGGCACTAAGCTCACACCAGAATGCTCCTGACAAAGAGGAGAAAGAAGAAAACCTCAATAGAACTAATTCTTCTACTACTAAAGAGACAGCATACTCGAAAGCTCCTGGATACACAACTTTTCATGTTTCCCAGGATCATTCTGTTGCTGCTTCATTAGGAGAGTGCCATGAATGTCATCATTCTTCAGTTCATGAATACCCATTGTTAAGATTTGGCTCTTCTTGTGACCCAAAGAATTTGGAGCCAGAAGCAACAAATTCGGTGACAGAAGATGATGAGCAAAAGCAGCAAGAAAGAGTGCAATTACCAAGCTCCAGGGATAGTAATGGGAGCCTTGGAAGTTCACCAAGCAAAGGGGATAATGAATCAAATGTAGCTGTAGAGTGTGAATTCCAATGGGAAGATCTTCAATTAGGAGAAGAGATTGGACAAAGTTCTTATGCTACTGATGTCGCTGTTAAGGTTTACTTTGGCAATGGATACACTGAAGATGCATTAAAAAGCTACACAAAAGAGATTGATATAATGAAGAGATTGAGACATCCTAATGTTTTGCTGTTCATGGGAGCCGTATATTCACAGGAAAGGGGTGCCATAGTCAGAGAGTTTTTACCAAGGCAGGCTGGATTTGTCTATGAATCAATTAATAAACGAATCTTAACTTTTGTCTGTCAGGTTGGAGACTTTGGCTTGTCAAGGTTGAAAGATGGAACTTCCTTGAATACAATATCTGGAAGAGCCACTGTTGTCGGAGTGGTGAGCTTTATGGATAGAAGACTGGATCTGCCGGAGGGGATTGATCCCCACGTAGCAAATATCATCCGTGACTGCTGGCACAGTTCTGCTGTTAAAGATTGA 1473 0.4168 MNTDEFTSSSGFGIMPKKHWPERLKCSWTETDLHFRNHSAETLYGWKKHKIIGQRVPELLITEEYHAPSQKILKRLTSGLPWSAQFPFKKKASELFMAMVTKSPLFEAGEITGVITVSSDAALFNCIGSENMRTNCEKSGANGASGVQGLNFKRIHWHPPPLIAPVPQVASSVSNLVLTNDTCNVSMGSRDTSTHEEVDKLEKLQALSSHQNAPDKEEKEENLNRTNSSTTKETAYSKAPGYTTFHVSQDHSVAASLGECHECHHSSVHEYPLLRFGSSCDPKNLEPEATNSVTEDDEQKQQERVQLPSSRDSNGSLGSSPSKGDNESNVAVECEFQWEDLQLGEEIGQSSYATDVAVKVYFGNGYTEDALKSYTKEIDIMKRLRHPNVLLFMGAVYSQERGAIVREFLPRQAGFVYESINKRILTFVCQVGDFGLSRLKDGTSLNTISGRATVVGVVSFMDRRLDLPEGIDPHVANIIRDCWHSSAVKD 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1482 490 Gene3D Phosphorylase Kinase; domain 1 330 409 - -
Acco12g1482 490 MobiDBLite consensus disorder prediction 279 328 - -
Acco12g1482 490 Pfam Protein tyrosine and serine/threonine kinase 349 410 IPR001245 GO:0004672|GO:0006468
Acco12g1482 490 Gene3D PAS domain 30 122 - -
Acco12g1482 490 SMART tyrkin_6 341 488 IPR020635 GO:0004713|GO:0006468
Acco12g1482 490 SUPERFAMILY Protein kinase-like (PK-like) 332 462 IPR011009 -
Acco12g1482 490 MobiDBLite consensus disorder prediction 212 226 - -
Acco12g1482 490 CDD PAS 28 120 IPR000014 -
Acco12g1482 490 SUPERFAMILY PYP-like sensor domain (PAS domain) 32 120 IPR035965 -
Acco12g1482 490 MobiDBLite consensus disorder prediction 205 237 - -
Acco12g1482 490 NCBIfam PAS domain S-box protein 36 120 IPR000014 -
Acco12g1482 490 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 212 412 - -
Acco12g1482 490 MobiDBLite consensus disorder prediction 306 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1482 Acco-ChrAcco12 23884984 23891977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1482 32 489 MAP Kinase Kinase Kinase AT4G23050 32.508 1.68e-70 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Acco12g1482 PK_Tyr_Ser-Thr 2.6e-07 CL0016