Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1475 ATGGTAGAGGTTAAAATGGAGCCGGATGAGTTCTCTTTGGATTCACCTAAAGCAGATGGACTCCGGTTATGTTTTTCAACCCCTGTTTCACGGAGAAGAGGACGAGCTAGACGATCATCAAAGGGGTGCTGGACAGAGGAAGAGGACAGCCGTTTGATTGAGGCAGTCAAGAAGCACAACGGAAGGAATTGGAAGAAAATAGCTGCATATCTCCCAGGGAGAACTGATGTTCAATGCTTGCATCGCTGGCAAAAAGTTCTGAATCCTGAACTTGTCAAGGGATCTTGGACAAAGGAGGAGGATGATTGTATACTTGAGCTAGTCACGAACTATGGTGTTAGGAAATGGTCCATTATTGCAAAACACTTGCCTGGTCGCATAGGGAAGCAATGCCGGGAGAGGTGGCATAATCACTTGGACCCAGCTATAAAGAAAGATGCATGGACAGAGGAGGAGGAAGCCACGCTTGCTTTCTATCACCAAATATATGGTAGCAAGTGGACCGAAATTGCAAGGTTTCTCCCTGGAAGGCCTGACAATGCCATTAAAAATCATTGGAACTGTTCAATGAAGAAGAAGTTGGAGGCATCCTCACCTGGATGTGATGCAATTGCTGCTGCCTGTGATTCCAACACTTGCAGAATCAATATGTTGGTTAAAGAAGATCATAACCTCAGTCAAATGGTTTCTCCCAAAAGGGGCTGCAGATTGAAGAACATTATAGATTCCTCCTTGACAGAATTGATTGCTCCGAATACATGTGAGGGGATGAGTGTTGGAATCGTGCAAGATGAGTGCAAATTGAACTCACCAAAAAGAGTTGTCAACCGACCCATAACTCCTTTTGATGTTCCTCAACTCAGGCTTGCTGCTGAACTAGATCGTGTTACTATTGAAGCTGTCAGTACTGTCCCTAATGAGCCGTCTAAGTCTTGTTCAGATGCAACGTTTGGGGATGGTGAGTGTTTTAGTCCACTTTCGAGCCTATCAGTATTGACTAGTTACAAGGAGGAAGCTCAAGTTGAGCCGAGAAATAAAAGAAACAGATCTCAAAGTCAAAACTTGTATCCTGCAAAGTTATCTCTGGTGGAAGATTTGGCTTCCTCCACAGAATCTATGAAAGAAAACCTCATCAATGGTTATTATTATCGTACTCCTCCCAAGTCCACGGCAGCCAGTAGCCCTGAATCTGTACTGAGGAGCTTAGCTATGACCTATGACAATATTCCTTCCATCATTAGGAGGAGAGCTCACAGTAAAATAACTCATGAAGCTGTATTTGTTGGTGTGAATGGGTTACACAATTTGAATTCGAAGCAGGGTGATGCCATGTTCATGTCTAAATCAATGACCTCTGCCAGGTCTCTCTTCAAAGGGCATTGA 1383 0.4396 MVEVKMEPDEFSLDSPKADGLRLCFSTPVSRRRGRARRSSKGCWTEEEDSRLIEAVKKHNGRNWKKIAAYLPGRTDVQCLHRWQKVLNPELVKGSWTKEEDDCILELVTNYGVRKWSIIAKHLPGRIGKQCRERWHNHLDPAIKKDAWTEEEEATLAFYHQIYGSKWTEIARFLPGRPDNAIKNHWNCSMKKKLEASSPGCDAIAAACDSNTCRINMLVKEDHNLSQMVSPKRGCRLKNIIDSSLTELIAPNTCEGMSVGIVQDECKLNSPKRVVNRPITPFDVPQLRLAAELDRVTIEAVSTVPNEPSKSCSDATFGDGECFSPLSSLSVLTSYKEEAQVEPRNKRNRSQSQNLYPAKLSLVEDLASSTESMKENLINGYYYRTPPKSTAASSPESVLRSLAMTYDNIPSIIRRRAHSKITHEAVFVGVNGLHNLNSKQGDAMFMSKSMTSARSLFKGH 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1475 460 CDD SANT 95 139 IPR001005 -
Acco12g1475 460 ProSiteProfiles Myb-like domain profile. 36 87 IPR001005 -
Acco12g1475 460 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 143 IPR017930 -
Acco12g1475 460 ProSiteProfiles Myb-like domain profile. 88 139 IPR001005 -
Acco12g1475 460 ProSiteProfiles Myb-like domain profile. 140 190 IPR001005 -
Acco12g1475 460 CDD SANT 44 87 IPR001005 -
Acco12g1475 460 Gene3D - 146 202 - -
Acco12g1475 460 SUPERFAMILY Homeodomain-like 90 186 IPR009057 -
Acco12g1475 460 PANTHER MYB PROTEIN-RELATED 41 112 - -
Acco12g1475 460 SMART sant 144 192 IPR001005 -
Acco12g1475 460 SMART sant 92 141 IPR001005 -
Acco12g1475 460 SMART sant 40 89 IPR001005 -
Acco12g1475 460 Gene3D - 40 92 - -
Acco12g1475 460 Gene3D - 93 144 - -
Acco12g1475 460 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 87 IPR017930 -
Acco12g1475 460 FunFam Transcriptional activator Myb isoform A 40 92 - -
Acco12g1475 460 CDD SANT 147 187 IPR001005 -
Acco12g1475 460 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 194 IPR017930 -
Acco12g1475 460 Pfam Myb-like DNA-binding domain 41 87 IPR001005 -
Acco12g1475 460 Pfam Myb-like DNA-binding domain 145 187 IPR001005 -
Acco12g1475 460 Pfam Myb-like DNA-binding domain 93 139 IPR001005 -
Acco12g1475 460 SUPERFAMILY Homeodomain-like 39 96 IPR009057 -
Acco12g1475 460 FunFam Transcriptional activator Myb isoform A 93 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1475 Acco-ChrAcco12 23525078 23528605 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1475 29 195 MYB Transcription Factor Family AT5G02320 68.263 7.90e-79 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco12g1475 Myb_DNA-binding 2.8e-18 CL0123