Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1452 ATGAGACAACCAGGAGCATATTCAGGGCTACACCGTGGGGGAGTAACAGGGAGGATGGGACCTCACGCGCTGCCATTAGCGAGGATAAAGAAGATAATGAAGAAATCTGGGGATGAAGTCAAGATGATATCAGGTGAGGCTCCTATTGCTTTTGCCAAAGCTTGTGAGATATTCATTGAAGAACTCACAAGAAGGTCTTGGCTCATGACCACCCAGTCCAAGCGTCGGACCCTCCTAAAGGACGACGTGGCCTCCGCCGTCATCGCCACCGATCTCTTTGACTTCCTCATCTCTTTGGTCACCCACCCCCACCACCACACTGACGATGATGCCTCTCCCTCTCCCTCTACTACCATTATGGAATCTTAA 369 0.5095 MRQPGAYSGLHRGGVTGRMGPHALPLARIKKIMKKSGDEVKMISGEAPIAFAKACEIFIEELTRRSWLMTTQSKRRTLLKDDVASAVIATDLFDFLISLVTHPHHHTDDDASPSPSTTIMES 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1452 122 SUPERFAMILY Histone-fold 15 96 IPR009072 GO:0046982
Acco12g1452 122 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 22 103 - -
Acco12g1452 122 FunFam Nuclear transcription factor Y subunit C 12 102 - -
Acco12g1452 122 Gene3D Histone, subunit A 15 102 IPR009072 GO:0046982
Acco12g1452 122 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 87 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1452 Acco-ChrAcco12 22979824 22980192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1452 22 112 CCAAT-HAP5 Transcription Factor Family AT5G63470 59.341 1.83e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Acco12g1452 CBFD_NFYB_HMF 1.7e-17 CL0012