Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco12g1422 | ATGCCACCAATGCTTCGATTACTGACCGTGAGCTACCAACAAGGGATGCTTAGGGCAATAATTGTGAGTTTCTCTGGTCTTTCTGTATTGAGTTATGAATTCTGGGTGATTCCAATGGGGAAAGGTAAACCTAGGGCTGTGGAAAAAGGTATAGCAGGGCAGAATCTTAGTGTTTCATCGTCCGGGTCACTGAATATACCGTCAGGGCCTGTATATTTTCCTACCGAAGATGAGTTCAAAGACCCCTTGGAATATATTTATAAGATCAGACCTGAAGCTGAGCCATATGGAATTTGTAAGATTGTACCACCAAAGAGTTGGAAGCCCCCATTTGCTTTGGATCTGGATTCTTTTACTTTCCCCACTAAAACACAGGAAATTCATAAGTTACAGGCTCGTCCTGCTGCGTGTGACTCCAAAACTTTTGAGTTGGAGTACTCTAGGTTTTTAGAGGATCACTGTGGTAAAAAGTCAAGGAAGAAAATTGTATTTGAAGGGGAAGAACTGGACTTGTGCACACTGTTTAATGCTGTTAAGAGATTTGGTGGTTTTGATAAAGTTGTGAAGGAAAAGAAATGGGGCGATGTTTCCCGGTTTGTAAGGCCAGGAAGAAAAATTACAGACTGTGCAAAGCATGTCCTATCACAGTTGTATTGTGACCATTTGTTTGATTATGAGGATTACTATAGTCAGTTGAATCAAGAGACAGGTAAGAGAGGCATGCTTGAGGATGAAAAAAGTGATCATGGCATTCAATCTTCAGGATCCAAGACGATGAGAAGAAGTTTTGATTGTTTGAAAGTTAAGGATTGTAAAGTGCAGAAGGAAGAACATGACCAGATTTGTGAGCAATGCAGAAGTGGTTTGCATGGGGACGTGATGCTTTTGTGTGATAGGTGTGATAAGGGCTGGCATATATATTGTCTCTCTCCACCCTTGAATCAAATTCCTCCAGGAAACTGGTATTGCTTTAATTGCTTGAATTCTGACAGGGACAGCTTCGGTTTTGTGCCTGGTAAGCAGTATGCCTTGGAAACCTTTAGACGTGTGGCTGATCGGTCAAGGAAGAGATGGTTTGGGCCAGGACCTGTTTCAAAGGTGCAAATAGAGAAGAAATTTTGGGAGATTGTGGAGGGATCGGTTGGTGAGGTTGAGGTTATGTATGGAAGTGATTTAGATACATCTGTCTTTGGAAGTGGTTTTCCACGCTCAACTGATCAGAAACCAGAATCAATTGATTCAAAATTATGGAATGAATACTCATCTAACCCATGGAATCTTAACAATTTGCCTAAATTGAAAGGGTCAATGCTTCAAGCTGTTCATCATAATATCACGGGGGTGATGGTACCCTGGCTGTATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCATTGCTTTTACTCAATAAATTATCTACACTGGGGAGAGCCAAAATGCTGGTACAGTGTTCCTGGTAGTGAAGCCAGTGCGTTTGAGAAGGTGATGAGAAGCAGTCTTCCTGATCTTTTTGATGCGCAACCAGATCTGCTTTTCCAGCTTGTAACTATGTTAAACCCATCTGTTTTGCAAGAACATGGAGTTCCAGTCTACAGCATAATTCAGGAGCCTGGGAATTTTGTTATTACCTTTCCCAGATCATACCATGGAGGTTTTAATCTCGGTTTGAATTGTGCAGAGGCAGTTAATTTTGCCCCTGCTGACTGGCTACCTTATGGTGCATTTGGAGCTGATCTCTACCAGCGATACCACAAAGCTGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTAGCCCAGTACAGTGACATTGATACCAAAGCATCTCCTTATTTGAAGAAGGAATTGCTCCGGATATGTGATAAAGAGAAATCTTGGAGAGAAAAACTCTGGAAAAATGGTATTGTCAAATCATCTCGCATGGCTCCTCGGCAATGTCCTCACTATGTGGGAACTGAAGAGGATCCACCATGCATTATTTGCCAGCAGTATATATATCTTTCTGCTGTTGTGTGCAGTTGCAGACCATCTTCTCTTGTATGCCTGGAGCACTGGAAACATCTTTGTGAGTGTAAAACTGTAAATCTACGTCTTCTCTATCGTCACTCACTTGCAGAATTGTATGACTTGGCACTTTCTGTGGACAATTGTACTTCTGAGGAGAGAACACTGGGTAGGAATATAAGAAAGAATTCTTCATATCCGGGTACATTGACAAAAAAGGTAAAAGGTGGTTCCATTACTTTCTCTCAGCTTGCAGAACAATGGCTTCGGCGATCTAGTGAGATTCTTCAGAATCCTTATTCAAGTGATGCTTTTGTTTCTGCACTAAGGGAAGCTGAACAATTTCTTTGGGCGGGTCCAGAGACGAATTCTGTTCGAGATATGGTGAAGAATTTGATTGAAGCTCAGAAGTGGGCAGAAGGGATAAGAGATTGTTTAAGAAAAATTGAAGCCTGGTTGTGTGATCAGGACTCTAACATGGAGAAAGTTCACTTAGAGTTTGTTGATGAGCTGCTAACATTTAATTCTGCACCATGCAATGAGCCTGCTTATCATAAGTTGAAGGAATATAAAGAACGGGCCGTATTGTTAAGTCAGGAGATTAATATTGCTTTATCAAAGTGTTCAAAGATGGCAGAGTTGGAATCTCTACATTCTAGAGCTTGTGGCTCTCAAATCTACGTGAGAGATGTGAAGAATTTGGAATGGAAAATTTCCTCTACTAAGGCATGGCTGCATAGAGCTAGAAGCTGCATCTCAATAAAACATCCTGCTGCAGTAAAGCTTGATGTTCTTTTCAAGTTGAAGTCAGAGATTATGGAGCTTCAAGTACAACTTCCAGAGATAGAAGTAATTCAGAATATATTAATTCAAGCAGAATCTTGTAGTTCAAAATGTAGTGAGACATTACAAGGTCCCATGACTCTAAAGAATGTCAATTTGCTGCTTAAGGAATGGGACAGCTTTATGGTTGATGTACCAGAGGTGAAGCTCCTGAGGCAATATTATAAGGATGCTGTTTCATGGGTTTCCAACTTTAACCGTGCATTAGGGACAACACATGAACGGGAGGATCAACATAATGTTGCTGATGAATTGAAGGGTATTTTAGAAGATGGTTTATCTTTAAAAATCCAAGGTGATAGTGGATTCTGTCTTCCTGCTCTTCATATTGATGAGTTCCCACTAGTTGAGACTGAGCTGCAGAAGGCTCTTTGCCGGGAAAAGGCTCAAAAGGCGCATAAATCTAAAATGTCTCTGGAATTTGTTCAAGAAGTGATGAAGGAGGCCACACTGCTGCAAATTGAAGGAGAGAAATTATTTGTTGGTTTATCTGGTGTACTTGATGTTGCCACAACTTGGGAGGAAAGAGCTAAAGAGATTCTTTCGCATAAGGCTTCCTTCTCTGACTTTGAGGACATGATCAGGACCTCAGAATCCATTTTTATGATTCTTCCTTCACTTAATGATGTGAAGGAAGCACTATTGGAAGCTAATTCTTGGTTAATGAATTCAAAACCATTCTTGGTTTCCTCTACTTGTCCGTCAGATTCTCTACGTAAAGTTGAGGACCTTCAGATGTTGGTTTCTCAGTCGAAGCTTATTAAAATAACGTTTGAAGAAATAAAGATGCTTGAAATAGTTCTGCGTAATTGCAAAGAATGGGAGGCTGAGGCATGTTCTGTATTGGAAGATGCCCTGCATATTTTTGAATTGGATAACATTGTTCATGGAATAAGCAGTGGCCTAATGGTCAAAATTGAAGGTTTGATTGCCAGAATGCAGTCTACCACTATATCTGGTTTGTCACTTGGTTTTGAGTTTGAAGAGATTCCAAAACTTGAAGCAACATGTTCTACACTGCAGTGGTGCAAAAAGATTCTTTCCTTCTGCAATCTTTCTCCTTCTTTAGAGGATGTTTTGGAGGCTACAAAAGACCTTCCTCATTCGTGTGGTTCTGGGGCCCTATTGAATCTACTGATTGGTGGAGTCAAATGGCTTAGGAGAGCCTTGGAGGTATTCTCTGGACCACACAATTCTAGAAGAAGCAAGTTAATTGAAGTTGAAGATATTATTAGAGATTACCAGACCATTAATATTCCTTTTGCAGCAGTAATTTACCATCTTGAAGAAGCTATTGGAAAACATAGGTTGTGGCAAGAACAGGCACATCGATTCCTTACTCTTTGTTCTGGGGAACAGTCTTGGTTACCAATGTTGAAACTCAAGGAACTAGGTGATACTGTTGCTTTCAGCTGCACAGAACTGGAATCGATTTTATCTGAAGTTGAGAAGGTGGAGAATTGGGAGAAACACTGCATGGATTATGTAGGAAATTTAGTCCAAAATGAGAATTCACTGTTTCACTCTCTGCAGAAGATGAAACAGAGTCTTGATAGGTCATTGTCCATATATAGCAAGTTGAAAGACTTCAAGGAACAATGTTTATGCATCTACTGCTTTACTGATTATAAAGATCAGGAATTTCTTACTTGCTCCTCTTGTAGAAACTGCTATCATATACTGTGTATTGGACCATTGGTGACCAATAGCCATGAAAATTATACTTGCCCTTTTTGTAAAATATTGAAGGGTGAATCCAATTATAAGAAGGGAACTCTCCTTATGAGGTTAGGGGAGAAGCGTGCTGAACTGAAAGCTCTTCTACAATTCCTCTGTGATGCTAAAAATTTGTGTGTAAGGATTGATGAGACAGATGCTCTCAACCAACTTGTCGAGCAAGCACTTCTATGCAAATCTTACTTGAGAGAAATAGTGAACTTCACATCTGCTAATGGAGAATATGATCTTGGTATCATCTCTGAAAGATTGACCATAGCTATAAAGGCATGTGAGGTTGCTAGTGTCTGTGATTATCAAGATGTACATGACCTTGAGTTGGCATTAGCAAGACACCTTTGGAAAATTCAAGTCAATGGAATGCTAAATAGTTCACTAAATCCTTCTATCCAAGAGGTTCAGAAGCATCTGAAAGAGGGACTGGCTATGGAAATATCACGTGAAGATCATTATATGCTGCCACTTGCAAAAATGAATTGCTTATATTTGCAGTGGGCAGAACTAACCAAGAAGGTTGCAGTTGATACTGGGGCGCTCAGCCTAGATAAAGTTTTTGAACTCATTGCAGAAGGTGAAAACTTGCCTGTTAATGTGGATGAGGATCTCAGGATTTTAAGGGCTAGAAGTATGCTTTATTGCATTTGTCGAAAGCCCTTTGATCCTGGGAGTATGATTGCATGTAATCAGTGTGGTGAGTGGTATCACTTTGAGTGCATGAAATTACCACACAGTCGAGAGTTCTACATTTGTCCTGCATGTAAACCCTCTACAACAGGATTGCCAACATCTCTGGTGGATCATGAGAGATTAAGTAGCGGTAAACTGGAGGAACCGAAAACACCGTCTCCAAGGCATACGAATCCAAGAAAGAAACAGAAGAAAGATGAGGCAATATGTGGAAGTGAGGATCAAATAGAAGTCAATAATTTTAGGAACGCGAGTGGGATAGGATGTGTTAGGTGGCAAAATCGAAAGCCTTTCAGAAGAGCAGCTAAGAAACGTGTTGACCTTCGGAGTCTTTCTTCATTTCTATGTATACACAACAACATTTACTGA | 5652 | 0.4038 | MPPMLRLLTVSYQQGMLRAIIVSFSGLSVLSYEFWVIPMGKGKPRAVEKGIAGQNLSVSSSGSLNIPSGPVYFPTEDEFKDPLEYIYKIRPEAEPYGICKIVPPKSWKPPFALDLDSFTFPTKTQEIHKLQARPAACDSKTFELEYSRFLEDHCGKKSRKKIVFEGEELDLCTLFNAVKRFGGFDKVVKEKKWGDVSRFVRPGRKITDCAKHVLSQLYCDHLFDYEDYYSQLNQETGKRGMLEDEKSDHGIQSSGSKTMRRSFDCLKVKDCKVQKEEHDQICEQCRSGLHGDVMLLCDRCDKGWHIYCLSPPLNQIPPGNWYCFNCLNSDRDSFGFVPGKQYALETFRRVADRSRKRWFGPGPVSKVQIEKKFWEIVEGSVGEVEVMYGSDLDTSVFGSGFPRSTDQKPESIDSKLWNEYSSNPWNLNNLPKLKGSMLQAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSINYLHWGEPKCWYSVPGSEASAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQEHGVPVYSIIQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYQRYHKAAVLSHEELLCVVAQYSDIDTKASPYLKKELLRICDKEKSWREKLWKNGIVKSSRMAPRQCPHYVGTEEDPPCIICQQYIYLSAVVCSCRPSSLVCLEHWKHLCECKTVNLRLLYRHSLAELYDLALSVDNCTSEERTLGRNIRKNSSYPGTLTKKVKGGSITFSQLAEQWLRRSSEILQNPYSSDAFVSALREAEQFLWAGPETNSVRDMVKNLIEAQKWAEGIRDCLRKIEAWLCDQDSNMEKVHLEFVDELLTFNSAPCNEPAYHKLKEYKERAVLLSQEINIALSKCSKMAELESLHSRACGSQIYVRDVKNLEWKISSTKAWLHRARSCISIKHPAAVKLDVLFKLKSEIMELQVQLPEIEVIQNILIQAESCSSKCSETLQGPMTLKNVNLLLKEWDSFMVDVPEVKLLRQYYKDAVSWVSNFNRALGTTHEREDQHNVADELKGILEDGLSLKIQGDSGFCLPALHIDEFPLVETELQKALCREKAQKAHKSKMSLEFVQEVMKEATLLQIEGEKLFVGLSGVLDVATTWEERAKEILSHKASFSDFEDMIRTSESIFMILPSLNDVKEALLEANSWLMNSKPFLVSSTCPSDSLRKVEDLQMLVSQSKLIKITFEEIKMLEIVLRNCKEWEAEACSVLEDALHIFELDNIVHGISSGLMVKIEGLIARMQSTTISGLSLGFEFEEIPKLEATCSTLQWCKKILSFCNLSPSLEDVLEATKDLPHSCGSGALLNLLIGGVKWLRRALEVFSGPHNSRRSKLIEVEDIIRDYQTINIPFAAVIYHLEEAIGKHRLWQEQAHRFLTLCSGEQSWLPMLKLKELGDTVAFSCTELESILSEVEKVENWEKHCMDYVGNLVQNENSLFHSLQKMKQSLDRSLSIYSKLKDFKEQCLCIYCFTDYKDQEFLTCSSCRNCYHILCIGPLVTNSHENYTCPFCKILKGESNYKKGTLLMRLGEKRAELKALLQFLCDAKNLCVRIDETDALNQLVEQALLCKSYLREIVNFTSANGEYDLGIISERLTIAIKACEVASVCDYQDVHDLELALARHLWKIQVNGMLNSSLNPSIQEVQKHLKEGLAMEISREDHYMLPLAKMNCLYLQWAELTKKVAVDTGALSLDKVFELIAEGENLPVNVDEDLRILRARSMLYCICRKPFDPGSMIACNQCGEWYHFECMKLPHSREFYICPACKPSTTGLPTSLVDHERLSSGKLEEPKTPSPRHTNPRKKQKKDEAICGSEDQIEVNNFRNASGIGCVRWQNRKPFRRAAKKRVDLRSLSSFLCIHNNIY | 1883 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco12g1422 | 1883 | SMART | PHD_3 | 281 | 327 | IPR001965 | - | |
| Acco12g1422 | 1883 | SMART | PHD_3 | 1744 | 1786 | IPR001965 | - | |
| Acco12g1422 | 1883 | SMART | PHD_3 | 1488 | 1533 | IPR001965 | - | |
| Acco12g1422 | 1883 | Pfam | PLU-1-like protein | 930 | 1051 | IPR013637 | - | |
| Acco12g1422 | 1883 | Pfam | PLU-1-like protein | 1080 | 1235 | IPR013637 | - | |
| Acco12g1422 | 1883 | CDD | PHD_RSF1 | 282 | 326 | - | - | |
| Acco12g1422 | 1883 | Pfam | PHD-finger | 281 | 328 | IPR019787 | - | |
| Acco12g1422 | 1883 | Pfam | PHD-finger | 1744 | 1787 | IPR019787 | - | |
| Acco12g1422 | 1883 | FunFam | Predicted protein | 387 | 590 | - | - | |
| Acco12g1422 | 1883 | SUPERFAMILY | ARID-like | 119 | 234 | IPR036431 | GO:0003677 | |
| Acco12g1422 | 1883 | SUPERFAMILY | FYVE/PHD zinc finger | 275 | 329 | IPR011011 | - | |
| Acco12g1422 | 1883 | SUPERFAMILY | FYVE/PHD zinc finger | 1484 | 1536 | IPR011011 | - | |
| Acco12g1422 | 1883 | ProSiteProfiles | Zinc finger RING-type profile. | 1489 | 1533 | IPR001841 | - | |
| Acco12g1422 | 1883 | SMART | cupin_9 | 419 | 585 | IPR003347 | - | |
| Acco12g1422 | 1883 | Coils | Coil | 859 | 879 | - | - | |
| Acco12g1422 | 1883 | FunFam | Transcription factor jumonji (JmjC) domain-containing protein | 55 | 159 | - | - | |
| Acco12g1422 | 1883 | PANTHER | LYSINE-SPECIFIC DEMETHYLASE | 65 | 1072 | - | - | |
| Acco12g1422 | 1883 | Gene3D | Cupin | 305 | 591 | - | - | |
| Acco12g1422 | 1883 | SMART | JmjN_1 | 68 | 109 | IPR003349 | - | |
| Acco12g1422 | 1883 | ProSitePatterns | Zinc finger PHD-type signature. | 282 | 326 | IPR019786 | - | |
| Acco12g1422 | 1883 | ProSiteProfiles | JmjN domain profile. | 69 | 110 | IPR003349 | - | |
| Acco12g1422 | 1883 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1475 | 1550 | IPR013083 | - | |
| Acco12g1422 | 1883 | ProSiteProfiles | Zinc finger PHD-type profile. | 279 | 329 | IPR019787 | - | |
| Acco12g1422 | 1883 | CDD | ARID | 138 | 226 | - | - | |
| Acco12g1422 | 1883 | Pfam | ARID/BRIGHT DNA binding domain | 150 | 226 | IPR001606 | GO:0003677 | |
| Acco12g1422 | 1883 | MobiDBLite | consensus disorder prediction | 1802 | 1830 | - | - | |
| Acco12g1422 | 1883 | ProSiteProfiles | ARID domain profile. | 136 | 230 | IPR001606 | GO:0003677 | |
| Acco12g1422 | 1883 | SMART | ARID_2 | 133 | 226 | - | - | |
| Acco12g1422 | 1883 | Gene3D | Cupin | 51 | 164 | - | - | |
| Acco12g1422 | 1883 | ProSitePatterns | Zinc finger PHD-type signature. | 1745 | 1785 | IPR019786 | - | |
| Acco12g1422 | 1883 | Pfam | JmjC domain, hydroxylase | 452 | 568 | IPR003347 | - | |
| Acco12g1422 | 1883 | SUPERFAMILY | FYVE/PHD zinc finger | 1741 | 1790 | IPR011011 | - | |
| Acco12g1422 | 1883 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1731 | 1787 | IPR013083 | - | |
| Acco12g1422 | 1883 | SUPERFAMILY | Clavaminate synthase-like | 352 | 603 | - | - | |
| Acco12g1422 | 1883 | ProSiteProfiles | Zinc finger PHD-type profile. | 1486 | 1535 | IPR019787 | - | |
| Acco12g1422 | 1883 | ProSiteProfiles | JmjC domain profile. | 419 | 585 | IPR003347 | - | |
| Acco12g1422 | 1883 | Pfam | jmjN domain | 70 | 103 | IPR003349 | - | |
| Acco12g1422 | 1883 | Pfam | C5HC2 zinc finger | 662 | 713 | IPR004198 | - | |
| Acco12g1422 | 1883 | SMART | bright_3 | 137 | 231 | IPR001606 | GO:0003677 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco12g1422 | Acco-ChrAcco12 | 22073947 | 22104644 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco12g1422 | 334 | 720 | JUMONJI Transcription Factor Family | AT4G20400 | 40.338 | 5.51e-92 | 319 |
Transcription factors information