Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1416 ATGTTTGCTCAAGGACTACTCCGTGCCTGTTACTTGAAGTCTCTGAATTCTCCAGAACAAGTTCATCGGTCGGTTGCTTTCAAAGAGGCAGCAGAACAGTTTATAATGGGTTGTAATATTTCCAAGCTCTCAGCATGCTGCTCTGGCATAGAGCAGAGAGGTTCATTATTGCCTGAGGACAACATTGACAAAAATGAAAAGAAAAGTGAGACCACTCATGTGCAACTATTTCAAGAGTTCACAATTCATCAGCTCATCAAGGCTACTTCTGGATTTGCTGTTGAAAATATAGTTTCCGAAAAAGGAGAAAATGCTCCAAATTTGGTTTATAAAGGGAAAATGGAGAATCAAACACTGATTGCCGTCAAACGGTTCAATAAACAGGCTTGGCCTGATGCCAGACAATTTACAGCAGAAGCCAGGAAAATTAGTCATCTAAGGAACGAAAGATTGGTAAGTCTACTTGGATGCTGCAGTGCTGGTGACGAGAGGTTACTTGTTGCTGAATATATGCCCAATGATACTTTGGCAACACACTTGTTCCATTGGGAAACAATGGCCATGAACTGGCAAATGCGACTAAGAGTTGCTTTATACATTGCCCAAGCGCTAGAATACTGCGCAAGCAAAGGACGTGCGCTGTATCACGATCTAAATGCTTATAGAGTACTTTTTGACAATGAAGGCAATCCTAGACTCTCATGCTTTGGTTTGATGAAGAACAGTCGAGATGGTAAAAGTTATAGTTCAAATCTGGCATTTGCTCCACCCGAATATCTGAAGTTAGGTAAAATTACTCCAGCAAGTGTAACATATAGTTTCGGAACCTTATTGCTGGACCTTCTCACTGGAAAGCACATTCCTCCAGGCCTTGCACTTGACCTGATTCGGGAAAGGAACCTTCGGACGTTAACGGATTCTTGTTTAGAAGGACAATTTTCCAATGATGAAAGGGTTGACTTTGTGCATTTAACCTCACAGTGTTTACAATTAGAACCACAGGAGCGTCCTCGTCCAAATTATTTGATTACTGCCTTAATACCTCTACAGAAGGATTCTGAGATTCCTTCTTATTTTTTGATGGGTATACCATATGTTGCTGCTACTTCATCCGTTTCACCACTTGGTGAAGCTTGTCAGAGAATGGATTTGACTGCCATCCATGCATTCCTTGAAAAGCTTGGGTATGAAGATGATGAGGGTACTTCTGAGATGGATGAAGCATTGTACTCAAAGAAGAAGGGTGATGCTGCTTTTGGTTATAAAGACTTTAGCACCGCGATTGATAGTTATACAAAGTTCATAGGTGTTGGGACCATGGTTTCTCCAACAGTTTATGCACGTCGCAGCCTGTGTTATCTGAAGATCAAAAAGCCAGAACAGGCACTGAAGGATGCATTACAAGCACTAACAATTTCTCCTAACTACTACATTGCATTCTACATACAAGCTGTGGCACTTCTTGCATTGGGCAAAGAGAATGAGGCGCAGGTGGCTCTTAAACAGGGTTCTTTACTTGAAAGCAAAAAAAAGTACATAAATTAG 1545 0.4123 MFAQGLLRACYLKSLNSPEQVHRSVAFKEAAEQFIMGCNISKLSACCSGIEQRGSLLPEDNIDKNEKKSETTHVQLFQEFTIHQLIKATSGFAVENIVSEKGENAPNLVYKGKMENQTLIAVKRFNKQAWPDARQFTAEARKISHLRNERLVSLLGCCSAGDERLLVAEYMPNDTLATHLFHWETMAMNWQMRLRVALYIAQALEYCASKGRALYHDLNAYRVLFDNEGNPRLSCFGLMKNSRDGKSYSSNLAFAPPEYLKLGKITPASVTYSFGTLLLDLLTGKHIPPGLALDLIRERNLRTLTDSCLEGQFSNDERVDFVHLTSQCLQLEPQERPRPNYLITALIPLQKDSEIPSYFLMGIPYVAATSSVSPLGEACQRMDLTAIHAFLEKLGYEDDEGTSEMDEALYSKKKGDAAFGYKDFSTAIDSYTKFIGVGTMVSPTVYARRSLCYLKIKKPEQALKDALQALTISPNYYIAFYIQAVALLALGKENEAQVALKQGSLLESKKKYIN 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1416 514 SMART tpr_5 477 510 IPR019734 GO:0005515
Acco12g1416 514 SMART tpr_5 443 476 IPR019734 GO:0005515
Acco12g1416 514 FunFam probable serine/threonine-protein kinase At4g35230 67 170 - -
Acco12g1416 514 SUPERFAMILY TPR-like 407 506 IPR011990 GO:0005515
Acco12g1416 514 Gene3D Tetratricopeptide repeat domain 390 513 IPR011990 GO:0005515
Acco12g1416 514 Pfam Protein tyrosine and serine/threonine kinase 109 344 IPR001245 GO:0004672|GO:0006468
Acco12g1416 514 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 63 510 IPR045845 GO:0004672|GO:0009742
Acco12g1416 514 Gene3D Phosphorylase Kinase; domain 1 65 170 - -
Acco12g1416 514 ProSiteProfiles Protein kinase domain profile. 95 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g1416 514 Gene3D Transferase(Phosphotransferase) domain 1 172 362 - -
Acco12g1416 514 FunFam probable serine/threonine-protein kinase At5g41260 172 363 - -
Acco12g1416 514 SUPERFAMILY Protein kinase-like (PK-like) 67 356 IPR011009 -
Acco12g1416 514 ProSiteProfiles TPR repeat profile. 443 476 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1416 Acco-ChrAcco12 21888489 21899331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1416 59 346 Glycoside Hydrolase AT3G07070 34.494 6.06e-41 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Acco12g1416 PK_Tyr_Ser-Thr 3.9e-26 CL0016