Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1402 ATGACGACTCGAATAGCGCCTGGTGTGGGAGCAAACTTGCTGGGTCAACATTCCGCTGAGAGGAATCAAGATGCTACTGCTTATGTTGGCAATCTCGATCCCCAGGTATCCGAGGAGTTATTATGGGAGCTATTTGTTCAGGCGGGTCCAGTTGTTAATGTCTATGTACCCAAAGATAGAGTGACTAACCAACATCAAGGTTATGGTTTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCCATCAAGGTTCTTAATATGATTAAAATGTATGGAAAACCAATACGAGTAAATAAGGCTTCCCAAGACAAAAAGAGCTTGGATGTGGGAGCAAACCTTTTCATAGGAAACCTTGATCCTGATGTGGATGAGAAACTCTTGTATGATACATTCAGTGCCTTTGGAGTAATTGTTACAAATCCCAAGATCATGAGAGATCCTGAAACAGGAAATTCCCGTGGATTTGGTTTCATTAGCTACGATTCATTTGAGGCATCTGATTCCGCTGTTGAGGCAATGAATGGGCAATATCTTTGCAATCGTCAAATAACAGTGTCTTATGCATACAAGAAAGATACGAAAGGGGAAAGGCACGGTACACCAGCAGAAAGAGTTCTGGCTGCCAGCAACCCAGGTCCCCAGAAGAGCAGGCCCCACACTTTGTTTGCAAGTGGACCTCCGTCACTTCCCAATGCTCCTCAGGCTAATGGTGTCATTGCCGCCGCTCCAGTGCCGCCTCGTCCCTATGCTAATGGAGTTGCTTCCCCTGCAATTCCTGCCCTTCGACCATCACTTCCTCAAGCTGCACCATTTCCACCTATGCCAGTAGCCCCTCAACCCGCATGGCATCAGCAGCAACCAGGTCAAACAATGCCACTGCCCCCTATCCAGCAGTTCAGGCCACCTCACTTGAGTATGCCACCCCCTCCACCTCCACATGCGATGCCAGCTCCCCCTAGGCCTCTTCCACCACCAGCTGCAATGACAGGCCAACAACCTGTTTGGCGGCCACCGCTACCCCTTCCACCCCAGCAACAGGGTGTGCGACCTCCATTTCCTCAATCCTCCATGCCACCACCGCCTCCTCCAAGTTGA 1098 0.4954 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKMYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAVEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPGPQKSRPHTLFASGPPSLPNAPQANGVIAAAPVPPRPYANGVASPAIPALRPSLPQAAPFPPMPVAPQPAWHQQQPGQTMPLPPIQQFRPPHLSMPPPPPPHAMPAPPRPLPPPAAMTGQQPVWRPPLPLPPQQQGVRPPFPQSSMPPPPPPS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1402 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Acco12g1402 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Acco12g1402 365 CDD RRM1_SF3B4 28 100 IPR034158 -
Acco12g1402 365 Gene3D - 16 106 IPR012677 -
Acco12g1402 365 Gene3D - 107 204 IPR012677 -
Acco12g1402 365 CDD RRM2_SF3B4 111 193 IPR034159 -
Acco12g1402 365 PRINTS Proline rich extensin signature 212 228 - -
Acco12g1402 365 PRINTS Proline rich extensin signature 313 338 - -
Acco12g1402 365 PRINTS Proline rich extensin signature 354 365 - -
Acco12g1402 365 PRINTS Proline rich extensin signature 260 276 - -
Acco12g1402 365 PRINTS Proline rich extensin signature 278 295 - -
Acco12g1402 365 MobiDBLite consensus disorder prediction 265 281 - -
Acco12g1402 365 MobiDBLite consensus disorder prediction 265 365 - -
Acco12g1402 365 SUPERFAMILY RNA-binding domain, RBD 25 194 IPR035979 GO:0003676
Acco12g1402 365 SMART rrm1_1 26 99 IPR000504 GO:0003723
Acco12g1402 365 SMART rrm1_1 113 187 IPR000504 GO:0003723
Acco12g1402 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Acco12g1402 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Acco12g1402 365 MobiDBLite consensus disorder prediction 295 365 - -
Acco12g1402 365 FunFam splicing factor 3B subunit 4 109 200 - -
Acco12g1402 365 FunFam Splicing factor 3b subunit 4 16 108 - -
Acco12g1402 365 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 353 - -
Acco12g1402 365 MobiDBLite consensus disorder prediction 194 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1402 Acco-ChrAcco12 21408211 21419967 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1402 18 198 Eukaryotic Initiation Factors Gene Family AT4G34110 29.293 8.68e-19 85.9