Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1368 ATGTCTTGTTCTTCGTCATCATCAAGATCGCTTGTGTCTATGAGCACGTCTGAAAGCTCAACCACGGTACTCCAACAGCGTCTTCAGTTCATTTTGCACAGCCGAACTGAGTGGTGGGTGTATGTCATTTTCTGGCAAGCTTGGAAAGAAGATAGCAGTAGTAGTACAAGGAGCCAAGTGTTGTTAAATTGGGGTGATGGCCACTTCCGTGGAACCAGAGAGTCCAAGTCCAAGGAAACTGCCACGAGTGATGATCAATGGCAAAGCCCTAACGGAGGCCGAAAGATGAAGTTGATTATTCCAAAACACATGGAGGACGGCGGCGACGGACATGTGACAGAGATGGAATGGTTTTATACAGTATCGTTGACTCGATCGTTTGCCGCCGGCGATGATGTGGTGGGGCGTGCCTTCGGCTCAGCCACACATGTTTGGCTGGCCGGAGCCAACACCGACCTCAGCGGCAGGGAGCTGCAGGTCCACGAGTGTGGGAGAGTTCGAGAAGCGTTTGCTCATGGAATCCAAACTCTGGTGTGCATTCCCATTCCTAATGCCCTTGGAGTTCTTGAGCTAGCCTCCAATGACTTAATAACCCAAGACTGGAGCCTGATTCAATCTGTTAAATCAGTCTTCGAGTTCGACAACTTCTTTATCCCCAGTCCACCAGGTCTGGTTTCTGAGCCTTATCATCATTTCAAGAACGAAGCTCTCAATGACTCTGACGAAGCTCGATCCATCAGAAAAAAGGGAAGAAATGAGGCTGATAAAGCACAAGAGCTAATAATGCCTCTAAACCACGTGGAGGCCGAGAGGCAGAGAAGAGAGAGACTGAATCAAAGATTCTATGCTCTCCGTTCCGCTGTTCCTAATGTTTCCAAAATGGACAAGGCTTCTCTGCTCTCTGATGCGGTCGCCTACATCAATGAACTAAAAGGGAAAATTGAGGAACTAGAGATTAGATTCAAGAAAACTGAGGAGAAAGATGCTCTGGCGACAGTGTATTATACTCACTCGAGTTCTGAAGCGAGTGCAATTGGTGTTGAGGTCAACATTGTGGGGACGGAGGCGATGATAAGGGTTCAGTGCCTGGATGTGAATCACCCAGCTGCAAGGTTAATGGATGCTCTAAGACAACTTGATTTTCATGTTCATCATGCCAGTGTATCAAGAGTCAAAGACCTAATGCTGCAAGACGTCGTCGTTCGGGTTCCCAATAATTTCATGACTGCCCAGGCCATGAAAAATGCCATTCTACAACGTTTATAG 1266 0.4755 MSCSSSSSRSLVSMSTSESSTTVLQQRLQFILHSRTEWWVYVIFWQAWKEDSSSSTRSQVLLNWGDGHFRGTRESKSKETATSDDQWQSPNGGRKMKLIIPKHMEDGGDGHVTEMEWFYTVSLTRSFAAGDDVVGRAFGSATHVWLAGANTDLSGRELQVHECGRVREAFAHGIQTLVCIPIPNALGVLELASNDLITQDWSLIQSVKSVFEFDNFFIPSPPGLVSEPYHHFKNEALNDSDEARSIRKKGRNEADKAQELIMPLNHVEAERQRRERLNQRFYALRSAVPNVSKMDKASLLSDAVAYINELKGKIEELEIRFKKTEEKDALATVYYTHSSSEASAIGVEVNIVGTEAMIRVQCLDVNHPAARLMDALRQLDFHVHHASVSRVKDLMLQDVVVRVPNNFMTAQAMKNAILQRL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1368 421 SMART finulus 267 316 IPR011598 GO:0046983
Acco12g1368 421 PANTHER MYC 15 420 IPR045084 GO:0003700|GO:0006355
Acco12g1368 421 Gene3D - 255 327 IPR036638 GO:0046983
Acco12g1368 421 MobiDBLite consensus disorder prediction 72 94 - -
Acco12g1368 421 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 264 325 IPR036638 GO:0046983
Acco12g1368 421 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 261 310 IPR011598 GO:0046983
Acco12g1368 421 Pfam Helix-loop-helix DNA-binding domain 265 310 IPR011598 GO:0046983
Acco12g1368 421 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 24 211 IPR025610 -
Acco12g1368 421 Coils Coil 300 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1368 Acco-ChrAcco12 19946681 19947946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1368 23 421 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 37.292 1.87e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco12g1368 bHLH-MYC_N 3.9e-42 CL0161