Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1315 ATGAGGAAAGGTTTGTGTGATAATAAGGTAGCTTTGAAGAGAGGAGGTTGGTCCAAACAAGAAGATGAGAAACTCATTGCTTACATCAACAAACACGGAGGGCGTTGCTGGCGTACCCTCCCTCAAGCTGCTGGGTTACTTCGCTGCGGCAAGAGTTGTAGGCTAAGATGGATAAACTATCTGAGGCCTGACCTTAAAAGAGGTAACTTTGCTGAAGATGAAGAAGATCTCATTATGAAGCTTCATGCCCTTCTCGGCAACCGGTGGTCGTTGATAGCAGGAAGATTACCAGGGAGGACCGATAATGAGGTGAAGAACTATTGGAACTCTCACCTGAGAAAAAAGCTCATAAACAAGGGAATTGACCCCAACAATCATCGGTTAACTCGAGATCCGCTATTAATGTCCGGAAGCTCAGCATCATCAGCATATACAAGCCTGAAAGACAACAGTGCCAAGAATGATGAGGATGAGCGAATTGCAAAACCATATGCTGATAAAAACAACTCTAAGAATAATTGTGATCAAGTCTCAAATCCAGCAAGTGGTTTAGAAGAAGAAGAATCATTTTGCATACCAGATTTAAACCTTAACCTCACTTCTATGGGCAGTGAAATTATTTCTTCTTCTTCACCTCCTCCATCAGATCCAAAGCCAATTCATGAATATTCTAGAACATCAACTGAACTTCTTCTGTTTAGGTGA 705 0.4199 MRKGLCDNKVALKRGGWSKQEDEKLIAYINKHGGRCWRTLPQAAGLLRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIMKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRKKLINKGIDPNNHRLTRDPLLMSGSSASSAYTSLKDNSAKNDEDERIAKPYADKNNSKNNCDQVSNPASGLEEEESFCIPDLNLNLTSMGSEIISSSSPPPSDPKPIHEYSRTSTELLLFR 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1315 234 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Acco12g1315 234 CDD SANT 69 112 IPR001005 -
Acco12g1315 234 SMART sant 66 114 IPR001005 -
Acco12g1315 234 SMART sant 13 63 IPR001005 -
Acco12g1315 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Acco12g1315 234 FunFam MYB-related transcription factor 13 66 - -
Acco12g1315 234 Gene3D - 11 67 - -
Acco12g1315 234 CDD SANT 17 61 IPR001005 -
Acco12g1315 234 MobiDBLite consensus disorder prediction 204 227 - -
Acco12g1315 234 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Acco12g1315 234 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Acco12g1315 234 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Acco12g1315 234 MobiDBLite consensus disorder prediction 150 165 - -
Acco12g1315 234 MobiDBLite consensus disorder prediction 131 149 - -
Acco12g1315 234 MobiDBLite consensus disorder prediction 131 181 - -
Acco12g1315 234 Gene3D - 69 132 - -
Acco12g1315 234 MobiDBLite consensus disorder prediction 166 181 - -
Acco12g1315 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Acco12g1315 234 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Acco12g1315 234 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 179 - -
Acco12g1315 234 FunFam MYB transcription factor 68 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1315 Acco-ChrAcco12 17903069 17904012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1315 1 199 MYB Transcription Factor Family AT4G38620 53.398 8.33e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco12g1315 Myb_DNA-binding 3.4e-13 CL0123