Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1292 ATGATTTTGCCTTTTTCGTTCCAAGACGGGACTGGCCCGCCGCAGAGACAATCCGAATCCCTCGTCATCAGATCATCGCCATACTTACTCCCTCTACCTCATCCGCCGTCGAAGTTGAAGCAGAACCACAGACTTGTCGTCGCCGTGCTTACTCCCTCAGGCCCACCCACCATCGGCCTCCTCCCTTCTGAGTTCTCACTTAGTCTCTTCAGGCATCAACCACTCGTCCACCATAGCCAAAACGATACCCCTTACTCTATCCCTCAAATGGAGGATGCTGAAGGAGTCCTCAGCTTCGATTTCGAGGGCGGCCTCGACACTGCTCCTGCCAACCCAGCGGCGCCTTCTGGACCTCTGGCCTCATCTGATTCTCCCGCCGTTGCTACCGCAGCAGCTAATGGTGTTACACCTGGCCCGACCGACACTGCTGCGAGCAACATTCCTGGCCGCCGGAGCTTCCGGCAGACGGTGTGCCGTCACTGGCTTCGTGGACTCTGCATGAAGGGCGATGCGTGCGGCTTCTTACACCAATATGACAAAGCGCGGATGCCCGTTTGCCGGTTTTTTAGATTATATGGGGAGTGTCGGGAGCAGGATTGCGTGTATAAGCACACAAACGAAGATATCAAGGAGTGTAACATGTACAAGTTGGGATTTTGTCCGAATGGTCCTGATTGCCGGTATAGGCATGCAAAATTGCCTGGACCTCCCCCTCCTGTTGAAGAAGTGCTTCAAAAGATTCAGCATTTATATTCTTACAATTATGCCAACTCTAGCAAATTTTTCCAACAAAGAGGTTCTGGCTATTCTCAGCAAGCTGAGAAACCTCAGTTTCCACAAGGTCCTAATTCTGCAAGCCAAGCTGTGCCTGGAAAGCCATTAGCAGCAGAATCGGGCAATGTCCAGCAGCAGCAGCAGCAACAGCCAATACAACAGGCTCAGCAGCAGGGTAGCAATAGTCAAATACAAAATACTACTAATGCCCAACCCAATCAGACGAACAGAACGGCAACGCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGCTATCTGTTCAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAAGCTAAACTTATTGAAGCCTTTGACTCAGTGGAAAACGTGATTTTGATTTTCTCAGTCAACAGAACTCGACATTTTCAGGGTTGTGCAAAGATGACATCCAGGATTGGGGGCTCTGCTGCCGGGGGAAACTGGAAATATGCTCATGGAACCGCACATTATGGGCGTAACTTCTCTGTTAAATGGTTAAAGTTATGTGAATTATCATTTCACAAGACTCGCCATTTAAGGAATCCATACAATGAGAACTTACCAGTAAAGATAAGTAGAGATTGTCAAGAACTGGAGCCTTCTATTGGTGAGCAGTTGGCATCCTTGCTTTATCTTGAGCCAGATAGTGAACTTATGGCTGTCTCACTTGCAGCAGAATCTAAGAGAGAGGAAGAGAAAGCAAAGGGATTGAATCTAGATAATGGAGGAGAAAATCCAGATATTGTTCCATTTGAGGACAATGAAGAGGAGGAAGAGGAGGAGAGCGATGAAGAGGAGGAGAGCTTTGGTCCAGGTGTTGGGCCGGCTGCTCAAGGCAGAGGTAGGGGTAGAGGCATCATGTGGCCTCCTCACATGCCTATGGGACGTGGAGCTCGGCCTATTCCAGGAATGCAGGGTTTTCCGCCAGTAATGTTGGGAGATGGATTATCCTATGGACCAGTTACGCCTGATGGATTTGGTATGCCAGATCTATTTGGTATGGGCCCTCGTGGTTTTGGTCCCTATGGTCCTCGGTTCTCTAATGATTTTGCAGGGCCCCCAGCGGCGATGATGTTTCGTGGGCGACCCTCTCAGCCTGGGATGTTTCCAGGTGGTGGGTTTGGGATGATGATGAATCCCGCTCGTGCTCCCTTTATGGGTGGAATGGGGGCTCCAGGTGGAAATCCTCCACGGGGCAGTAGACCAGGAGGTATGCCTCCAATGTTCATGCCACCACTGCAACATCAAAATGCTAACCGTGTTGCTAGGAGAGATCAAAGACCTAATGATCGGAATGATAGGTATGGTCCAGGGCTAGAGCCGGGCAAGGGTCCAGATGCGATGAGTCAATCAGGCGGGCTTGATGATGACATGCAATACACAGGCCGGGAGGATCAGTATGCTGTTGGAAACAACCTTAGAAATGAAGAGAGTGAAAGTGAGGATGAGGCACCTCGAAGATCTAGACACGGTGAGGGGAAAAAAAGAAAAGGTGAAGTTTAG 2313 0.4933 MILPFSFQDGTGPPQRQSESLVIRSSPYLLPLPHPPSKLKQNHRLVVAVLTPSGPPTIGLLPSEFSLSLFRHQPLVHHSQNDTPYSIPQMEDAEGVLSFDFEGGLDTAPANPAAPSGPLASSDSPAVATAAANGVTPGPTDTAASNIPGRRSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQHLYSYNYANSSKFFQQRGSGYSQQAEKPQFPQGPNSASQAVPGKPLAAESGNVQQQQQQQPIQQAQQQGSNSQIQNTTNAQPNQTNRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLIEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSAAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAVSLAAESKREEEKAKGLNLDNGGENPDIVPFEDNEEEEEEESDEEEESFGPGVGPAAQGRGRGRGIMWPPHMPMGRGARPIPGMQGFPPVMLGDGLSYGPVTPDGFGMPDLFGMGPRGFGPYGPRFSNDFAGPPAAMMFRGRPSQPGMFPGGGFGMMMNPARAPFMGGMGAPGGNPPRGSRPGGMPPMFMPPLQHQNANRVARRDQRPNDRNDRYGPGLEPGKGPDAMSQSGGLDDDMQYTGREDQYAVGNNLRNEESESEDEAPRRSRHGEGKKRKGEV 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1292 770 ProSiteProfiles Zinc finger C3H1-type profile. 206 233 IPR000571 GO:0046872
Acco12g1292 770 ProSiteProfiles Zinc finger C3H1-type profile. 152 179 IPR000571 GO:0046872
Acco12g1292 770 MobiDBLite consensus disorder prediction 1 20 - -
Acco12g1292 770 MobiDBLite consensus disorder prediction 690 707 - -
Acco12g1292 770 MobiDBLite consensus disorder prediction 122 148 - -
Acco12g1292 770 MobiDBLite consensus disorder prediction 657 770 - -
Acco12g1292 770 MobiDBLite consensus disorder prediction 265 340 - -
Acco12g1292 770 MobiDBLite consensus disorder prediction 519 538 - -
Acco12g1292 770 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 148 208 - -
Acco12g1292 770 CDD YTH 346 480 IPR007275 GO:0003723
Acco12g1292 770 MobiDBLite consensus disorder prediction 501 558 - -
Acco12g1292 770 ProSiteProfiles YTH domain profile. 345 480 IPR007275 GO:0003723
Acco12g1292 770 SUPERFAMILY CCCH zinc finger 154 177 IPR036855 GO:0046872
Acco12g1292 770 MobiDBLite consensus disorder prediction 745 770 - -
Acco12g1292 770 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 114 762 IPR045168 -
Acco12g1292 770 MobiDBLite consensus disorder prediction 107 148 - -
Acco12g1292 770 Pfam YT521-B-like domain 345 479 IPR007275 GO:0003723
Acco12g1292 770 MobiDBLite consensus disorder prediction 265 287 - -
Acco12g1292 770 MobiDBLite consensus disorder prediction 297 340 - -
Acco12g1292 770 SMART c3hfinal6 208 232 IPR000571 GO:0046872
Acco12g1292 770 SMART c3hfinal6 152 178 IPR000571 GO:0046872
Acco12g1292 770 SMART c3hfinal6 180 206 IPR000571 GO:0046872
Acco12g1292 770 Gene3D - 146 210 - -
Acco12g1292 770 Gene3D ph1033 like domains 322 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1292 Acco-ChrAcco12 16989545 17017757 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco12g1292 YTH 2.8e-44 CL0178