Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1291 ATGGGGGATCACTTTGTATTGCTGGTTGATCGTTTGATCACTGAATCCACATTAGAAGCTGCACTTGAAAGCAGAAATCGTGCAATGCAGGAGGCTGCAGCCTCAGCTGTGAATGAAGCAAAAGAAGTTATAAAGATGGGCATGGAAGATGTGAAATCTCCGGGGAAAATTGTTGAATGTCGGATATGTCATGATGAAGATGAAAATTCCAATATGGAGACACCCTGCTCCTGCTGTGGTAGCTTGAAGTATGCACACCGCAGATGTATACAAAGGTGGTGTAATGAGAAGGGTGACACTATCTGTGAGATATGCCACCAGCAATATAAACCTGGTTATACTGCTCCACCTTCATTATTTCGGTTTGGACGAATTCCAATGACTTTCAGGGGAAATTGGGAGATTTCTAGAAGAGATTTGCACAATCATGGTCGCTTGGTTCACATGGTTTCCACGGACGACCAGTATTCAGATTCTAGTTCTGGAAATTTACAGTGCTATCGTTTGAATTTGATTGCTCTCATGTTCATAATTTTATTTATTTTCAGACATACTCTTCCTCTCATAATCAGTGGAAACATGGACGATTCCATTTCTCTGTTTTTGGTGTTACTATTTCTAGCTGTGGTAATTTTTCCTCCTGTATATTTAATTGTGAAAGCAGCAGTGACATCTATACAACACCATCGGCGGCAGCGACAACAACGGGAGCCTCCTAATGCCTCGGTCAACCTGTCAGATGATGAAAGTGAGGAGCAAGTAGCTTTGCCGTCTCAGCTTCACGTTATTCGTGTTCAGTGA 801 0.422 MGDHFVLLVDRLITESTLEAALESRNRAMQEAAASAVNEAKEVIKMGMEDVKSPGKIVECRICHDEDENSNMETPCSCCGSLKYAHRRCIQRWCNEKGDTICEICHQQYKPGYTAPPSLFRFGRIPMTFRGNWEISRRDLHNHGRLVHMVSTDDQYSDSSSGNLQCYRLNLIALMFIILFIFRHTLPLIISGNMDDSISLFLVLLFLAVVIFPPVYLIVKAAVTSIQHHRRQRQQREPPNASVNLSDDESEEQVALPSQLHVIRVQ 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1291 266 ProSiteProfiles Zinc finger RING-CH-type profile. 52 112 IPR011016 GO:0008270
Acco12g1291 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 115 IPR013083 -
Acco12g1291 266 MobiDBLite consensus disorder prediction 230 251 - -
Acco12g1291 266 SUPERFAMILY RING/U-box 58 110 - -
Acco12g1291 266 CDD RING_CH-C4HC3_MARCH 60 106 - -
Acco12g1291 266 FunFam Zinc finger family protein 48 115 - -
Acco12g1291 266 Pfam RING-variant domain 60 105 IPR011016 GO:0008270
Acco12g1291 266 SMART ringv_2 59 106 IPR011016 GO:0008270
Acco12g1291 266 MobiDBLite consensus disorder prediction 237 251 - -
Acco12g1291 266 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 235 IPR033275 -
Acco12g1291 266 Pfam Protein of unknown function (DUF3675) 111 221 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1291 Acco-ChrAcco12 16946725 16949330 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1291 59 106 C3H Transcription Factor Family AT2G37950 47.059 3.08e-07 48.1