Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1237 ATGGAAGATAGAGCTTTCTTACCGATCAGTTCAGTTCCTAGTTTTGCTCAAGGCCTTAAGATTTTGCTGGTTCATAATGACACCTTGTCCCTTATGAACTTGTCATCTATGCTTGAGAAATACTCATTCAGAGAAACAGTTCTTAAATGCGTCTGTGAGCAACACATAACAGTGATAGGATTTGATTATTCAGTTACTGTTGCTGATGAAGTAAAAGCAGCTATGTCGATGATTTGTGATGCTGAAGAAGGCCAATTCAACCTGGTAATGGCTAAAGATAACATGCCTGACATGGATATTCCTTCATTTCTGCACTTCATGCTTGAAAAGTACATCCCTGTCATCTTCATGACTTCTGGAGAATACAATGATGTAACATGGAAAGCATTGGCTAAAGGCTCATGTTTTTTCCTGGTAGAGCCAATCCTTGTGGAGGATCTCAAATATGTGTGGCAGCATGTTTATCACACAAGAGTCAACTTTGCCACGAAAACTAATGAAGAAAATTTTTCAAACAAGGTTCATGGAACTGTTGCTGATCATAGAAAATGCCTGCAGGGAAAAGAAAAGAGACAAAGGTTGAAGATGAACTTTGACAGCAATCACCTTACTGCCTTTATAGATGAAGAGGATGAGGATACAGAAAGAGAACAAAAGTTTGATGAATATGCAGAGAAAAGGCCACGTATTGTTTGGACTCAGGAGCTGCATCAGAAGTTCTTGGATGCCATTAATGTTCTGAGTGAAAGGAATAATATTCGCCCAAAGGCAATACTTGAACAGATGAATGTGCCTAACCTCACAGCTCGCCAGATTTCAAGTCATCTTCAGAAATACAGAACTCAAGAACTGATAAACCAGCAGGCTTGCGTTTCTGGGTTCACTCCAATGGCAGCATTTTCAAACTTTGATGGCAAATCCCAGCCTTCCTCAGGTTCTCCAGCCCTTCGTGGAAGCCAAAATCAAAACCAGTATTTATATGAATTTCCAACAGCAGCAATGAGCAATTATGGAAACCAAAACCTAGAAGCTGAAGTGGAACGGCAGCCTATAGCAGATGCTTCAATGGACCAAATTAATTACCAAGCCATGAGATCAGCACATTATGATACTATCAAAATGCTTGAGGAAGATTGTGAAGAACTTGACTATTCTCAAAATGGAGTACTTCCTCATCAAATTGATCAATACTGTGAGATGCTAAGGAACACTCTTTTAAGCAATAACAGCCCTCATCCTCAAGAGCCTGATATGTGA 1257 0.3978 MEDRAFLPISSVPSFAQGLKILLVHNDTLSLMNLSSMLEKYSFRETVLKCVCEQHITVIGFDYSVTVADEVKAAMSMICDAEEGQFNLVMAKDNMPDMDIPSFLHFMLEKYIPVIFMTSGEYNDVTWKALAKGSCFFLVEPILVEDLKYVWQHVYHTRVNFATKTNEENFSNKVHGTVADHRKCLQGKEKRQRLKMNFDSNHLTAFIDEEDEDTEREQKFDEYAEKRPRIVWTQELHQKFLDAINVLSERNNIRPKAILEQMNVPNLTARQISSHLQKYRTQELINQQACVSGFTPMAAFSNFDGKSQPSSGSPALRGSQNQNQYLYEFPTAAMSNYGNQNLEAEVERQPIADASMDQINYQAMRSAHYDTIKMLEEDCEELDYSQNGVLPHQIDQYCEMLRNTLLSNNSPHPQEPDM 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1237 418 NCBIfam myb-like DNA-binding domain, SHAQKYF class 228 282 IPR006447 GO:0003677
Acco12g1237 418 SUPERFAMILY Homeodomain-like 225 281 IPR009057 -
Acco12g1237 418 Gene3D - 224 284 - -
Acco12g1237 418 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 316 IPR045279 GO:0009736
Acco12g1237 418 SUPERFAMILY CheY-like 18 158 IPR011006 -
Acco12g1237 418 Gene3D - 15 166 - -
Acco12g1237 418 FunFam Two-component response regulator 223 284 - -
Acco12g1237 418 ProSiteProfiles Response regulatory domain profile. 20 155 IPR001789 GO:0000160
Acco12g1237 418 Pfam Myb-like DNA-binding domain 232 280 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1237 Acco-ChrAcco12 15121671 15129788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1237 12 282 Response Regulator Gene Family AT1G68210 31.987 1.01e-29 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Acco12g1237 Myb_DNA-binding 2.3e-06 CL0123