Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1229 ATGGGTGTAAGTGAGGAAGCAGGATCCAGGAACAACTTTTGTTACGATTCAACATGGCCATTCCATGATGTTGAGGAGACAAAGATAGTCTTTTTTAAGCTTCGAAGTTTAGGGGTGCCACTTTTTTCCATGGATTCAAACACTTCAAGCTTTTTTCTGAACTCTTCAACAACTTTTCACTCTGATTTCTACCATGGCAAAGAGGATGAAGTTGATGATCATGGCATGATTGATCTGGGACTTAGCCTCAGAACTGTCCAACCTGAAACTTATCATGCTTCTAGCAACTTTTTGAGTTTGTGGAGATATGAGGATGACCTTATGGATTGGCCAGCACAGCCCAATAATCTGAACAACCTCAAGAGCTCAAGCACAACAATGCATTCTAAATCTGTTGCAGAAAACTTTGATGAAGAAATAGAAGGAGTTCAAAGCAATGATAGGTGGGCTTATGTGAAGGTTAATATGGATGGTGTTACAGTGGGCAGAAAAATCTGTGTCCTTGATCATGAAGGCTACCCAAGTCTTTCAAACCAGTTAGAGAACATGTTTGGAAGCAAATCTGTTTCTGGTTTGAAACTGTTTCAATTTGAGTCAGAGTATTTACTGTTCTACAAAGACAGAGAAGATCATTGGAGAACTGTGGGTGATGTCCCATGGAAAGAATTCGTAGAAAGTGTGAAGAGGTTGAGGATTGCAAGAAAGAATAAAGCAGCCTAA 720 0.3986 MGVSEEAGSRNNFCYDSTWPFHDVEETKIVFFKLRSLGVPLFSMDSNTSSFFLNSSTTFHSDFYHGKEDEVDDHGMIDLGLSLRTVQPETYHASSNFLSLWRYEDDLMDWPAQPNNLNNLKSSSTTMHSKSVAENFDEEIEGVQSNDRWAYVKVNMDGVTVGRKICVLDHEGYPSLSNQLENMFGSKSVSGLKLFQFESEYLLFYKDREDHWRTVGDVPWKEFVESVKRLRIARKNKAA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1229 239 ProSiteProfiles PB1 domain profile. 149 237 IPR000270 GO:0005515
Acco12g1229 239 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 74 238 IPR003311 GO:0005634|GO:0006355
Acco12g1229 239 Pfam AUX/IAA family 125 238 IPR033389 -
Acco12g1229 239 SUPERFAMILY CAD & PB1 domains 149 232 - -
Acco12g1229 239 Gene3D - 144 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1229 Acco-ChrAcco12 14940422 14942937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1229 144 232 B3 DNA Binding Superfamily AT1G19220 37.079 1.36e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Acco12g1229 AUX_IAA 2.4e-23 CL0072