Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1161 ATGACTTCTTCTAAGAACGCCGCCGTCCACGCCGTCGGCGGCAAGACCGCCAGAGCCTGCGACAGCTGCATAAGGAAGCGTGCTCGCTGGTACTGTGCCGCCGACGATGCTTTCCTCTGCCAATCCTGTGACTCCCTCGTTCACTCCGCCAACCCATTGGCTCGTCGCCATGAAAGGCTACGCCTCAAAACTTCCTCCTTTAAGTCCTCCTCCATCGATCTCACTCTCGCTCCCTCCTGGCACCGTGGCATCACCAAGAAGGTTCGCACGCCTCGACATGGAAAGAACAACCACTCTTCCACCACCGCGGCCACCGCCCATCAAACCACCAGGAACCCCTTCCATCTCGTGCCTGAAGTGGCTTCCGATGAATATTCCAATTCTCACGACGAAAATGAAGAGCAGCTTCTTTATCGGGTACCCATATTTGACCCGTTTGTAACAGAGCTTTGTGCTACTCCTCCATCCTCTGCAACTTCAGCCGAAGCAGCAGCAACGGCCAATACGCCCCGTCCGAACCAGACAGAAAGCAAAAAAGTCGTCTCATCGCCTGGAAACAAAAGCCATAATAATAATAATGGGGTGGACAATTTACACGGCTTTCTTCCATCGGAAATGGAACTTGCTCAGTTTGCCGCCGATGTTGAGAGTTTACTGGGCAGGGGATTAGAGAATGAGTGTATAGGCATGGAGGATTTAGGGCTTATTGATAGTAAAGAGAAGGAATCGAGGGAATATTCTGTGGGCAGTGAAAAAGTGAAGGTGGAGGAAGATGATGAAGAGAGCCCTTGTAAGGTTGAAGCGGATGAGATGGAGATTGGAATCAGAGAAGCATTTGAACTGAACTTCGATTACGATGAGTCTCCGGCAGCAACAAGCGAACAACCAGACAATAACAACGACGAGGACGAGAAGAAGGTCAGTGAAGAAGAAGTCAAAGCCAATAGTAATCAGAGAAAGAAGAAGATATTGTTGCAATTGGATTACGAAGCAGTCATATCAGCTTGGGCATCTCAGAAATCTCCATGGACGACAGGTGGCAAACCAGACTTTGACGCCGACGAGTGTTGGCCGGGATGCATGGGTATGTGTGGAAAGGAGCTTCATCAACCGTACTATGGAGAAATGGGAACATACCAGGGAGGGATGGGAGACGGAGGGAGAGAGGCAAGAGTGACGAGGTACAGAGAGAAGAGGAGGACGAGGTTGTTTTCGAAGAAAATAAGGTACGAGGTTCGCAAATTGAATGCAGAGAAGAGACCCAGAATGAAAGGGAGGTTTGTGAAGAGGGCTTCTTTTGCAGTTGCTAATACTAATAATATAACACCATCTTCCTCCTGCTCTTTGCTCAACAAATTAAATTAA 1365 0.4908 MTSSKNAAVHAVGGKTARACDSCIRKRARWYCAADDAFLCQSCDSLVHSANPLARRHERLRLKTSSFKSSSIDLTLAPSWHRGITKKVRTPRHGKNNHSSTTAATAHQTTRNPFHLVPEVASDEYSNSHDENEEQLLYRVPIFDPFVTELCATPPSSATSAEAAATANTPRPNQTESKKVVSSPGNKSHNNNNGVDNLHGFLPSEMELAQFAADVESLLGRGLENECIGMEDLGLIDSKEKESREYSVGSEKVKVEEDDEESPCKVEADEMEIGIREAFELNFDYDESPAATSEQPDNNNDEDEKKVSEEEVKANSNQRKKKILLQLDYEAVISAWASQKSPWTTGGKPDFDADECWPGCMGMCGKELHQPYYGEMGTYQGGMGDGGREARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAVANTNNITPSSSCSLLNKLN 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1161 454 CDD Bbox1_BBX-like 19 62 - -
Acco12g1161 454 MobiDBLite consensus disorder prediction 89 112 - -
Acco12g1161 454 Pfam B-box zinc finger 17 59 IPR000315 GO:0008270
Acco12g1161 454 MobiDBLite consensus disorder prediction 95 112 - -
Acco12g1161 454 Pfam CCT motif 388 430 IPR010402 GO:0005515
Acco12g1161 454 MobiDBLite consensus disorder prediction 241 265 - -
Acco12g1161 454 MobiDBLite consensus disorder prediction 298 315 - -
Acco12g1161 454 MobiDBLite consensus disorder prediction 158 196 - -
Acco12g1161 454 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Acco12g1161 454 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 7 431 - -
Acco12g1161 454 SMART bboxneu5 15 62 IPR000315 GO:0008270
Acco12g1161 454 ProSiteProfiles CCT domain profile. 388 430 IPR010402 GO:0005515
Acco12g1161 454 MobiDBLite consensus disorder prediction 288 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1161 Acco-ChrAcco12 13466010 13467558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1161 10 430 C2C2-CO-like Transcription Factor Family AT1G25440 46.575 2.85e-106 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Acco12g1161 CCT 1.2e-17 CL0281