Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1158 ATGACAAACCCTGCGAAAAAACTCAGAAAACCTGGGAACAATATAAATTTCCTCAAAATGGTAAAGAAAAAGCCTCATGAGCCAGTTATGTCCAGAAAACTGCGGATTATTTATAATGATCCTGAAGCCACAGAGTCATCTTCAAGCGAAGACGAAGAAGATGGGTGTGTGAAGAGGACAAAACGATTCGTTCAAGAGCTCACTCTACCGCCCAAACCTCCACATCGCCTTCCCCAGAAGTCGGAGACAGTTGAAACTGAAAGCTTTAATTGCCACTCTAATGGCAAGTCAGTTAAAAAATGTGAACCATGTAAACCTAAACGACCCAGAAGACGTTCCACTTCTCTGTACAGAGGCGTTCGACTCAGAAACTCTGGGAAATGGGCGGCGGAGATTCGCCATCCGATTAAAGGTCGACAATGGTTGGGTACTTTTGATACTCCAGAGGAGGCATCTCGAGCTTATGAAGCTAAAAGAAGAGAGTTTGAAGCCATGGATTCTGTTGCTGTTTCTACATATTCATCAGACTCGGGCAGTGTTGTTTCTCAGACATCACCACCCTCTGTTCTTGAACTCTATACTTCAGTTGAGAATCGTCATATTTCAAGTAAAGAAGTCGGTCATCTTGATTCTGCTCTTGCAGCTCTGCAAATGCCTGATTCCCTTTCGAATTCTTCAGAGAATTACAGGAATTCAGGGGATGAAGACAATGATTTGGAATCTGGATTTGAAGCTCAACAAATCCCTGATTTGAGTTTGCAGAGAAATCACACTGACTTGGCGTCAATCAAAGAAGAAGCGAAGAATTTGGCGTCTGAGCTTGAAGCAAGTATGGAGATACCCGATTTGAGTATTATTTCACAAGTGCCGATTCCAGAATGTTCAGAGCCTCACATGTTTGATCTGGGTTGTTTAACGGTGGGTGATTTGAAGCAGTGTTTTGACGATGAGGATGATCTTTCTGGGTTGCTGGGTGGTGGAATTTGTGGGATTAATGGTGATGATGATGGGCCTTGTGAGCTTCCTGATTTTGATTTTGCAGATTTTGGTGCAGATGACGAGTTTGCAGGTTGGTTTGAGGAACCCCTCAATATACCTTGTGCATGA 1107 0.4327 MTNPAKKLRKPGNNINFLKMVKKKPHEPVMSRKLRIIYNDPEATESSSSEDEEDGCVKRTKRFVQELTLPPKPPHRLPQKSETVETESFNCHSNGKSVKKCEPCKPKRPRRRSTSLYRGVRLRNSGKWAAEIRHPIKGRQWLGTFDTPEEASRAYEAKRREFEAMDSVAVSTYSSDSGSVVSQTSPPSVLELYTSVENRHISSKEVGHLDSALAALQMPDSLSNSSENYRNSGDEDNDLESGFEAQQIPDLSLQRNHTDLASIKEEAKNLASELEASMEIPDLSIISQVPIPECSEPHMFDLGCLTVGDLKQCFDDEDDLSGLLGGGICGINGDDDGPCELPDFDFADFGADDEFAGWFEEPLNIPCA 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1158 368 Coils Coil 260 280 - -
Acco12g1158 368 SUPERFAMILY DNA-binding domain 115 162 IPR016177 GO:0003677
Acco12g1158 368 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Acco12g1158 368 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Acco12g1158 368 MobiDBLite consensus disorder prediction 220 240 - -
Acco12g1158 368 Gene3D AP2/ERF domain 116 169 IPR036955 GO:0003700|GO:0006355
Acco12g1158 368 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 181 - -
Acco12g1158 368 CDD AP2 115 157 IPR001471 GO:0003700|GO:0006355
Acco12g1158 368 MobiDBLite consensus disorder prediction 88 113 - -
Acco12g1158 368 MobiDBLite consensus disorder prediction 32 57 - -
Acco12g1158 368 ProSiteProfiles AP2/ERF domain profile. 116 174 IPR001471 GO:0003700|GO:0006355
Acco12g1158 368 SMART rav1_2 116 175 IPR001471 GO:0003700|GO:0006355
Acco12g1158 368 Pfam AP2 domain 116 164 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1158 Acco-ChrAcco12 13364539 13365645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1158 25 367 AP2-EREBP Transcription Factor Family AT1G68550 32.961 1.07e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco12g1158 AP2 1.6e-08 CL0081