Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1141 ATGAAGATATTCGTCAAGACTCTCAAGGGCACCAGCTTCGAAATCGAAGTCGAGCCTGAGGATAAGGTTGCTGATGTGAAGAAACATATAGAATCTGTCCATGGTGAAACTACTTATCCTGCTGCACAGCAAATTCTTATTCATCAAGGGAAGGTTCTCAATGATAATACTACCTTGGAGGAAAATAAAGTAGCTGAACACAGTTTTGTTGTAATCATGCTATCCAAGACTAAGAGCTCATCAGGCCAGGGATCTACTACTGCACCTTTGGTTAAGGCGCCTCAGACTAGTTCAGCTCCTACGCCATCCCAGGTGTCAACGGAAGCATCTCAAGCTCCTGCTACAGCTGGGGCTTCGCCTGCATCTGTTACTGTTACTGCACCTGCACCTTCACCTTCACCTTCACCGGCTCCAGCTCCGGCTGGGGCAGGGTCTGATGTCTATGGGCAGGCAGCATCTAATCTTGTTGCTGGGAACAACTTGGAGGGAACAATTCAACAAATGCTTGATATGGGTGGAGGGAGCTGGGATAGGGATACTGTTATCCGAGCGCTTCGTGCTGCTTTCAACAACCCTGAGAGAGCTGTTGAATACTTGTATTCAGGTATTCCCGAGCAAGCTGAAGCCCCCCCTGTGGCTCGCGCACCTGCAAGCGGTGCCCAGACTGGAAATGCTCCATCTGCAGCTCCACAAGAAGCACAACCTGCACCTGTACCTTCAAGTGGACCTAATGCTAATCCTTTAGATCTCTTTCCTCAGGGCCTGCCAAATGTTGGTGCTGGTGGAGCTGGTGCAGGCAATCTAGATTTTCTGCGCAACAGTCAACAGTTCCAAGCATTGCGAGCCATGGTTCAGGCTAATCCACAAATATTGCAGCCTATGCTTCAAGAGCTTGGGAAACAAAATCCTCATCTAATGAGATTGATTCAAGAGCATCAAGCTGACTTTCTTCGCCTGATTAATGAACCTGTGGAAGGTGGTGAGGGGAATATATTGGGGCAGCTGGCTAATGCCATGCCGCAATCAGTATCTGTCACCCCTGAGGAGCGGCAAGCAATTGAACGTCTTGAAGCAATGGGATTCGATCGAGCACTTGTTTTGGAGGTGTACTTTGCATGTAACAAAAATGAAGAATTGGCTGCTAACTACCTGTTGGATCACATGCACGAGTTTGAGGAATGA 1182 0.4831 MKIFVKTLKGTSFEIEVEPEDKVADVKKHIESVHGETTYPAAQQILIHQGKVLNDNTTLEENKVAEHSFVVIMLSKTKSSSGQGSTTAPLVKAPQTSSAPTPSQVSTEASQAPATAGASPASVTVTAPAPSPSPSPAPAPAGAGSDVYGQAASNLVAGNNLEGTIQQMLDMGGGSWDRDTVIRALRAAFNNPERAVEYLYSGIPEQAEAPPVARAPASGAQTGNAPSAAPQEAQPAPVPSSGPNANPLDLFPQGLPNVGAGGAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVEGGEGNILGQLANAMPQSVSVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1141 393 SMART uba_6 161 201 IPR015940 -
Acco12g1141 393 SMART uba_6 349 386 IPR015940 -
Acco12g1141 393 CDD UBA1_Rad23_plant 155 204 - -
Acco12g1141 393 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Acco12g1141 393 Gene3D - 341 388 - -
Acco12g1141 393 MobiDBLite consensus disorder prediction 78 126 - -
Acco12g1141 393 Pfam XPC-binding domain 268 323 IPR015360 GO:0003684|GO:0006289|GO:0043161
Acco12g1141 393 SMART ubq_7 1 75 IPR000626 GO:0005515
Acco12g1141 393 Pfam UBA/TS-N domain 164 199 IPR015940 -
Acco12g1141 393 Pfam UBA/TS-N domain 349 384 IPR015940 -
Acco12g1141 393 FunFam UV excision repair protein RAD23 B 258 324 - -
Acco12g1141 393 CDD Ubl_Rad23 1 74 - -
Acco12g1141 393 SUPERFAMILY UBA-like 330 391 IPR009060 GO:0005515
Acco12g1141 393 PRINTS DNA repair protein Rad23 signature 360 374 IPR004806 GO:0006289
Acco12g1141 393 PRINTS DNA repair protein Rad23 signature 375 390 IPR004806 GO:0006289
Acco12g1141 393 PRINTS DNA repair protein Rad23 signature 294 316 IPR004806 GO:0006289
Acco12g1141 393 PRINTS DNA repair protein Rad23 signature 343 359 IPR004806 GO:0006289
Acco12g1141 393 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Acco12g1141 393 MobiDBLite consensus disorder prediction 78 145 - -
Acco12g1141 393 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 346 387 IPR015940 -
Acco12g1141 393 NCBIfam UV excision repair protein Rad23 1 392 IPR004806 GO:0006289
Acco12g1141 393 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Acco12g1141 393 SMART CBM 266 309 IPR006636 -
Acco12g1141 393 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 159 202 IPR015940 -
Acco12g1141 393 Gene3D - 154 204 - -
Acco12g1141 393 SUPERFAMILY UBA-like 147 205 IPR009060 GO:0005515
Acco12g1141 393 FunFam UV excision repair protein RAD23 homolog 340 388 - -
Acco12g1141 393 MobiDBLite consensus disorder prediction 210 257 - -
Acco12g1141 393 FunFam UV excision repair protein RAD23 homolog 154 204 - -
Acco12g1141 393 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 382 - -
Acco12g1141 393 Gene3D - 259 324 IPR036353 GO:0003684|GO:0006289|GO:0043161
Acco12g1141 393 FunFam UV excision repair protein RAD23 1 80 - -
Acco12g1141 393 SUPERFAMILY XPC-binding domain 264 330 IPR036353 GO:0003684|GO:0006289|GO:0043161
Acco12g1141 393 Gene3D - 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1141 Acco-ChrAcco12 12830632 12836912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1141 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 2.74e-08 50.4