Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1122 ATGGATAGAAGTAGTTGTGTAGATGAAAGCACGACGAGTGATTCGGTGTCAATATCGCTTTCTCCGGCGATGACTGAGTCGCCGCAAAGTGGAACACCTCAGAAGTCATCGCCGCTGCCGCCCAATAGTCTTTGCAGGGTTGTTAGCGGAGCCAGCACTATTGTGGACTCCTCCGATGGCGGCGTTGAGGCAGAGTCCAGGAAACTGCCGTCGTCGAAATACAAGGGAGTGGTGCCGCAGCCCAATGGACGATGGGGGGCCCAGATATATGAGAAGCACCAGCGTGTATGGCTTGGCACCTTCAACGAGGAAGATGAAGCAGCCCGGGCGTACGACATCGCCGCCCAGAGATACCGCGGTAAGGACGCTGTCACCAACTTTAAGCCCCTAAACGGCAACAACTGCCCCGACGATGATGATTTCGAGACGGAGTTCCTCAACTCGCATTCCAAAATGGAGATCGTGGACATGCTGAGGAAGCACACCTACAATGACGAACTCGAGCAGAGCAAGCGCAACCGCAACCGCGGCCTGGCCGAAGGAGGCCACGGCAAGTCGAGGAAGGACAGCGGCACAGGCTCGGGGTTCGACCGGACTCAGAAAGCCCGCGATCAGCTGTTCGAGAAAACCGTCACGCCAAGTGACGTGGGGAAGCTGAATCGTTTGGTGATACCCAAGCAACACGCGGAGAAGCACTTCCCGTTGCAGAGCGGAGGCGCTTCTTGCGAGACGCCAGCGGCGGCGGCGGCGAAGGGGGTGCTTTTGAATTTCGAGGATGATGGAGGGAAAGTGTGGAGGTTTCGGTACTCATATTGGAATAGTAGCCAGAGCTACGTGCTGACGAAAGGGTGGAGCAGGTTCGTGAAGGACAAGAACCTGAAAGCCGGCGATACGGTGAGTTTCCACCGGTCGACCGGATCGGACCGGCAGCTGTACATTGACTGGAAATCCCGGAATAACCAGACAGTCGGTGGTGAAGGTACCGGGATGGAGGGGCTGTACAATCCGGTTAGGCCGGTAGTGGAGCCGGTTCAGATGGTTCGGCTCTTTGGGGTGAACATTTTGAAAATGCCGGCGTCGGATTCTGTCATAGTTGGGGGCTGCCACGGCAAGAGGAAAGAGATGGAGCTGTTTACGTTAGAGTTTAGCAAGAAGCCAAAGATAATTGGAGCTTTGTAA 1179 0.5581 MDRSSCVDESTTSDSVSISLSPAMTESPQSGTPQKSSPLPPNSLCRVVSGASTIVDSSDGGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRYRGKDAVTNFKPLNGNNCPDDDDFETEFLNSHSKMEIVDMLRKHTYNDELEQSKRNRNRGLAEGGHGKSRKDSGTGSGFDRTQKARDQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLQSGGASCETPAAAAAKGVLLNFEDDGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDKNLKAGDTVSFHRSTGSDRQLYIDWKSRNNQTVGGEGTGMEGLYNPVRPVVEPVQMVRLFGVNILKMPASDSVIVGGCHGKRKEMELFTLEFSKKPKIIGAL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1122 392 Gene3D - 196 329 IPR015300 -
Acco12g1122 392 SMART rav1_2 73 134 IPR001471 GO:0003700|GO:0006355
Acco12g1122 392 SUPERFAMILY DNA-binding domain 72 128 IPR016177 GO:0003677
Acco12g1122 392 Pfam AP2 domain 72 120 IPR001471 GO:0003700|GO:0006355
Acco12g1122 392 ProSiteProfiles B3 DNA-binding domain profile. 207 319 IPR003340 GO:0003677
Acco12g1122 392 CDD B3_DNA 206 313 IPR003340 GO:0003677
Acco12g1122 392 CDD AP2 72 127 IPR001471 GO:0003700|GO:0006355
Acco12g1122 392 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 68 361 IPR044800 GO:0003700
Acco12g1122 392 SUPERFAMILY DNA-binding pseudobarrel domain 206 319 IPR015300 -
Acco12g1122 392 MobiDBLite consensus disorder prediction 165 194 - -
Acco12g1122 392 MobiDBLite consensus disorder prediction 1 75 - -
Acco12g1122 392 Pfam B3 DNA binding domain 207 318 IPR003340 GO:0003677
Acco12g1122 392 MobiDBLite consensus disorder prediction 165 199 - -
Acco12g1122 392 FunFam AP2 domain-containing protein RAP2.8 72 129 - -
Acco12g1122 392 Gene3D AP2/ERF domain 72 129 IPR036955 GO:0003700|GO:0006355
Acco12g1122 392 MobiDBLite consensus disorder prediction 8 56 - -
Acco12g1122 392 SMART B3_2 207 319 IPR003340 GO:0003677
Acco12g1122 392 ProSiteProfiles AP2/ERF domain profile. 73 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1122 Acco-ChrAcco12 12471032 12472210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1122 4 391 RAV Transcription Factor Family AT1G13260 57.107 2.14e-136 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Acco12g1122 B3 1.8e-29 CL0405