Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1072 ATGGAGAAGAAAGGAGAAATGGGTTTCTTTTGTTTAGCTCTGTTCTTCTCCTGGTGGGGTTCTGTTTCTGGTTTGCTTTCTCCTAAAGGTGTAAACTTTGAAGTGCAAGCTCTAATGGGGATTAAAGCTTCTTTGGTGGATCCTCATGGTGCACTTTATAATTGGGATGGTGATGCTGTGGATCCATGTAGCTGGGCTATGGTCACTTGTTCTTCTGATCATTTTGTCATTGCCCTTGGAATTCCAAGCCAGAATATATCTGGGACTTTATCTCCAAGCATTGGAAACTTGACAAATCTACAGACTGTGCTCTTGCAAGACAACAGTATATCAGGACCTATTCCTTCTGAGTTGGGGAGGCTCCAAAAACTTGAAACTCTTGATCTTTCTGATAATTCTTTTTCTGGTCACCTTCTTGATAGTTTTTCTCAAATGAAGAGCCTTCATTACCTGCGGCTGAATAATAACAGTCTTACTGGAGAAATTCCATCTTCTTTAGCTAATATGACCCAGCTTGCTTTTCTGGATATTTCTTATAATAACTTGAGCGGACCCGTACCTACAATAAATGCAACAACATTCAATATTGTAGGCAATCCCCAGATATGTGCTACTGGAACTGAGCAAAACTGCTTTAGAACTTCTGTACTTTCTTCTTCCTTGAATATTTCTCGAGATTCAAAGTCCTCTGGTAGATCTAAACACCACAAAGCTGCTTTGGCATTTGCTTCAAGCATAAGCTGCATCTGCTTACTAATTGTTGGGTTTGGTTTCGTCCTATGGTGGAGACAAAGATATAACAAGCAAATCTTCTTTGATGTCAGTGAACAATACCGTGAAGAAATTTGCCTTGGAAACCTCAAGAAGTTCAATTTCAGAGAGCTTCAGGCTGCTACAAATAACTTCAGCAGCAAGAACTTGATTGGCAAAGGTGGATTTGGGAATGTGTACAAAGGGTACCTCCCTGATGGTACAATTATAGCTGTGAAGAGGCTAAAAGATGGTAATGCCATTGGAGGCGAGATCCAATTTCAGACCGAAGTCGAGATGATTAGCTTAGCTGTCCACCGGAATCTCCTTCGCCTCTATGGATTTTGTATGACAGCTACTGAAAGACTCTTGGTTTATCCTTACATGTCCAATGGAAGTGTCGCTTCCCGTCTAAAAGCTAAACCTGTTCTTGATTGGGGAACAAGAAAGAGGATAGCCTTAGGAGCTGCAAGGGGATTGCTATATTTGCATGAGCAGTGTGACCCCAAGATCATTCACAGGGATGTGAAGGCTGCAAATATCTTGCTTGATGATGATTGTGAGGCCGTGGTGGGCGATTTCGGGTTGGCAAAGCTTTTGGATCACCATGATTCTCATGTTACAACAGCTGTGAGAGGGACTGTTGGGCACATAGCCCCAGAATATCTCTCAACAGGCCAGTCCTCTGAGAAAACAGATGTGTTTGGCTTTGGAATCCTCCTCCTTGAACTAATCTCAGGCCAGAGAGCTCTTGAATTTGGAAAAGCAATAAACCAGAAAGGAGCTGTTCTTGACTGGGTGAAGAAGATTCATCAGGAGAAGAAGCTTGACTTGTTAGTTGACAAGGATCTGAAAAATAACTATGATAAGATTGAACTTGAAGAAATAGTTCAAGTGGCTCTTTTGTGTACTCAGTACCTTCCAAGTCATAGGCCAAAGATGTCTGAAGTGGTTAGGATGCTTGAAGGAGATGGACTTGCAGAGAAATGGGAAGCCACACAGAGAGCAGAATCAACAAGAAGCAGAGGAAATGAACTCTCTTCTTCAGAGAGATACTCTGATCTTACTGATGACTCTTCATTGCTTGCACAAGCAATGGAACTTTCTGGACCAAGGTGA 1869 0.4205 MEKKGEMGFFCLALFFSWWGSVSGLLSPKGVNFEVQALMGIKASLVDPHGALYNWDGDAVDPCSWAMVTCSSDHFVIALGIPSQNISGTLSPSIGNLTNLQTVLLQDNSISGPIPSELGRLQKLETLDLSDNSFSGHLLDSFSQMKSLHYLRLNNNSLTGEIPSSLANMTQLAFLDISYNNLSGPVPTINATTFNIVGNPQICATGTEQNCFRTSVLSSSLNISRDSKSSGRSKHHKAALAFASSISCICLLIVGFGFVLWWRQRYNKQIFFDVSEQYREEICLGNLKKFNFRELQAATNNFSSKNLIGKGGFGNVYKGYLPDGTIIAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTATERLLVYPYMSNGSVASRLKAKPVLDWGTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDDCEAVVGDFGLAKLLDHHDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAINQKGAVLDWVKKIHQEKKLDLLVDKDLKNNYDKIELEEIVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEATQRAESTRSRGNELSSSERYSDLTDDSSLLAQAMELSGPR 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1072 622 Gene3D Transferase(Phosphotransferase) domain 1 379 591 - -
Acco12g1072 622 ProSiteProfiles Protein kinase domain profile. 302 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g1072 622 SUPERFAMILY Protein kinase-like (PK-like) 281 572 IPR011009 -
Acco12g1072 622 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Acco12g1072 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Acco12g1072 622 SUPERFAMILY L domain-like 34 197 - -
Acco12g1072 622 FunFam Somatic embryogenesis receptor kinase 1 271 378 - -
Acco12g1072 622 FunFam Somatic embryogenesis receptor-like kinase 1 379 591 - -
Acco12g1072 622 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
Acco12g1072 622 MobiDBLite consensus disorder prediction 589 613 - -
Acco12g1072 622 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Acco12g1072 622 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 21 582 - -
Acco12g1072 622 Pfam Protein kinase domain 303 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g1072 622 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 213 - -
Acco12g1072 622 MobiDBLite consensus disorder prediction 582 622 - -
Acco12g1072 622 SMART serkin_6 302 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g1072 622 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Acco12g1072 622 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1072 Acco-ChrAcco12 11462766 11466487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1072 9 622 Receptor kinase-like Gene Family AT5G16000 74.199 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Acco12g1072 Pkinase 5.4e-44 CL0016