Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1054 ATGTCTGACAAAGAAAATTTTGAGATAGATAGAAACGAAGATCATGTGAGTTATTCATCTAATATGCCCTCTGATTGGAGATTTCGGGTTCCTAATCTTGCAAATACATCAGTGGGTTTGGTGGATTCATATGTTTCAAGCTTCTGGGATCATTCCATGAGTTCCCAAAACTTGGGGTCATGTGACATCAATGTGCAGAACAACAATGGTAGCTCCTCAAGCTCAATTGGAAATAGAAAAGATGGTCTTGCTTTAGCTGGTCATGATAGAACACTTGAAATGGGTTGGAACCCAACAAGTTCTATTTTAAAAGGGGATGCTTTCTTACCAGACAGACCAACAATTGTCCCTCAGAATTTGTCTCAGATACCCACTGATTCTGCCTTTATTGAGAGAGCTGCAAGATTCTCATGCTTCAGTCAGTTCAATGGAGGGAATTTCAGTAGTATGATGAACTCATTTGGGATTCCTCAATCCACGGGTCTGTATGCTGGATTAGATAATGCTCTTGCAGGCCTTGTCTTAAAATCAGGTCATGGAGCAAGATCTCAAGAAAGTTCTCAGGATGTTCATGTTGGTGAATCTGCAAAAGATGTATCTCCATCTATTCAGAATTTGGCCACTAAAGGAAGTCCACTCAAGAATGACAAGAGAAGTGAAAGCCTTGTGGCATCTCAAGATGAAGCAAAACAGACTCTTGGCAGGTCTGTTAATGAGTCTGATAGAGCAGAATCAAGTGGTGGTGATGATGATGTTGGTAGTCAAAATGATATGCCTATGTTGGAGGGTACAACAAGTGGGGAACCTTCTAGCAAAGGACTAAACGCAAAGAAAAGGAAAAGAAGTGGGCAGGATTCTGATAATAAAAAAGCCAATGGAGGTTCTGAACCCCCAGGAGAGGCTGCAATGGACACTTCTGAGAGCCGACAGAAGGGATACCAACAACCAACTTCAACAACCAAGACTTCGGGGAAGAATACCATACAGGGGTCTCAAGCTTCTGATCCACCAAAGGAGGAATACATACATGTTAGAGCTCGCCGAGGTCAAGCAACAAATAGCCATAGCCTTGCAGAGAGAGTAAGGAGGGAAAAGATCAGTGAAAGGATGAAATTTCTTCAAGACCTTGTTCCTGGATGCAGCAAGGTGACTGGCAAGGCGGTTATGCTAGATGAAATCATTAACTATGTACAGTCACTTCAACGACAGGTTGAGTTTTTGTCTATGAAACTTGCGACTGTAAATTCAGGGCTGGATTTTAATCTTGAAGGACTTATTGCCAAAGATATGCTTCAGCAACGGCCTGGCCCCTCATCTGTATTGAGGTTTTCTCCAGAAATGCCTTTGGTTTTTCCTCCTTTACATCCATCTCAACCAGGTCTTCTACCGTCAAATCTTCCTGGCATGGCGAACTCATCTGATATACTTCGAAGAACCATTCATCCACAGTTAACTCCCTTGGTTGGAGGATTCAAGGATTCTAATCAGCTACCTGAGATGTGGGAGGATGAACTGCACAATGTTGTACAGATGAGCTATGCACCAACTGCTCCACTGAGTAGTCAAGATGATGATGGTAACAATGCATCAGCAGGAGGAATGAAGGTTGAACTTTGA 1617 0.4261 MSDKENFEIDRNEDHVSYSSNMPSDWRFRVPNLANTSVGLVDSYVSSFWDHSMSSQNLGSCDINVQNNNGSSSSSIGNRKDGLALAGHDRTLEMGWNPTSSILKGDAFLPDRPTIVPQNLSQIPTDSAFIERAARFSCFSQFNGGNFSSMMNSFGIPQSTGLYAGLDNALAGLVLKSGHGARSQESSQDVHVGESAKDVSPSIQNLATKGSPLKNDKRSESLVASQDEAKQTLGRSVNESDRAESSGGDDDVGSQNDMPMLEGTTSGEPSSKGLNAKKRKRSGQDSDNKKANGGSEPPGEAAMDTSESRQKGYQQPTSTTKTSGKNTIQGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNSGLDFNLEGLIAKDMLQQRPGPSSVLRFSPEMPLVFPPLHPSQPGLLPSNLPGMANSSDILRRTIHPQLTPLVGGFKDSNQLPEMWEDELHNVVQMSYAPTAPLSSQDDDGNNASAGGMKVEL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1054 538 MobiDBLite consensus disorder prediction 198 212 - -
Acco12g1054 538 MobiDBLite consensus disorder prediction 234 248 - -
Acco12g1054 538 FunFam Basic helix-loop-helix transcription factor 347 419 - -
Acco12g1054 538 SMART finulus 356 406 IPR011598 GO:0046983
Acco12g1054 538 MobiDBLite consensus disorder prediction 258 272 - -
Acco12g1054 538 MobiDBLite consensus disorder prediction 516 538 - -
Acco12g1054 538 Gene3D - 347 420 IPR036638 GO:0046983
Acco12g1054 538 MobiDBLite consensus disorder prediction 182 337 - -
Acco12g1054 538 CDD bHLH_AtBPE_like 340 425 - -
Acco12g1054 538 MobiDBLite consensus disorder prediction 273 287 - -
Acco12g1054 538 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 232 446 IPR024097 GO:0006355
Acco12g1054 538 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 350 400 IPR011598 GO:0046983
Acco12g1054 538 MobiDBLite consensus disorder prediction 307 334 - -
Acco12g1054 538 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 348 417 IPR036638 GO:0046983
Acco12g1054 538 Pfam Helix-loop-helix DNA-binding domain 353 401 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1054 Acco-ChrAcco12 11105783 11109007 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1054 1 514 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 43.726 1.54e-110 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco12g1054 HLH 6.9e-06 No_clan