Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1023 ATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATCGGCAAGTGACTTTCTCCAAAAGGAGAAATGGATTATTCAAGAAAGCTCATGAGATCTCTGTCCTCTGTGACGCTGAGGTTGCTCTTATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAGTATGCCACAGATTCTTGCATGGAGAAGATTCTGGAACGCCACGAAAGCTATGCTTATGCAGAGAGACAGCTAACTGGAGGAAATGATCCTGAGTCGCAGGAAAACTGGACGATTGAATATTCAAGACTGAGAGCTAAGACAGAGCTGTTGCAGAGGAACCATAGGCACTATATGGGAGAAGATCTGGGTTCCATGAGCCTCAAGGAGCTCCACAGTCTGGAGCAGCAGCTTGATACTTCCATCAAACTAATTCGCACCCGCAAAAACCAGCTCATGTATGAGTCCATTGCCGAGCTTCAGAAAAAGGAGAAAGTGATACAGGAAGAGAATAGCATGCTGGAAAAGAAGATAAAGGCGGCGGCGGCACAGCACAGCCATATGACATGGGGGCAGCAAAACCTGGGAGGACCCAATTCAGCTTACCAGCTCCTCCCACCTACTCTTCATCCCACTCTCCACATCGGAGGGAATTACAGAGAGGCAGGAGCAGAAAGGAACGAGCTTGACCTAACCCTGGAACCACTCTATTCCTGCAACCTCGGATGTTTTTAA 720 0.4778 MGRGRVQLKRIENKINRQVTFSKRRNGLFKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERHESYAYAERQLTGGNDPESQENWTIEYSRLRAKTELLQRNHRHYMGEDLGSMSLKELHSLEQQLDTSIKLIRTRKNQLMYESIAELQKKEKVIQEENSMLEKKIKAAAAQHSHMTWGQQNLGGPNSAYQLLPPTLHPTLHIGGNYREAGAERNELDLTLEPLYSCNLGCF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1023 239 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Acco12g1023 239 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Acco12g1023 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco12g1023 239 Coils Coil 152 179 - -
Acco12g1023 239 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Acco12g1023 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Acco12g1023 239 Pfam K-box region 87 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco12g1023 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco12g1023 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco12g1023 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco12g1023 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco12g1023 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco12g1023 239 FunFam Floral homeotic protein APETALA 1 13 68 - -
Acco12g1023 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco12g1023 239 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1023 Acco-ChrAcco12 10655642 10659969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1023 1 239 MADS-box Gene Family AT1G26310 58.431 4.35e-95 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco12g1023 K-box 5.8e-30 No_clan