Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1020 ATGGAATCTTGGAGTTACGCCTCAGAAGAGAGAAGCTATTTGTTTTCAGATGAAATGGATTTCTCACTGGATGCTTATATAAGAAGTAGAAGAGCAATGGTTGAATGGGACAATAATAATAATAATAAAGCCTCTTATATCTTTGAGAAAGATGGGTTTATTTCAGATAAAGAGGTAATTAAAAGCGTGGAGTTTGTGGACTTGGGCTTTCCAGATTTGTTCAGAAGGCCCGTTCATGGTGTTGGCCAGCCACTTGAAGCATCAAACTATGAACATGACAGTGATTCTAGTAAGAAAGTTAATTCCTCTACTCATGTTATTGCTCTTAATTCACCGTTGGGAGAAGTAGAATCTGAGCCTACTAGGCACCCATGTTCTGTAGTTGAATCTAAGAGTCATGATTCTTCACTGATTGATTTAAAGCTAGGGAGATTAGGAGATTGTAATGATTCAAGCAGTGATAAGAATGACAATGAGGGGTTCACTTTTCAACCTATGCATGTGTCATCTCTTACGAAGAGAGCTCGCACTTCCAGCTTACCAACTCAAACACCTGTTTGTCAAGTTTATGGTTGTAACAAGGATCTTAGCTCCTCAAAAGAGTACCACAAAAGGCACAAAGTTTGTGATGTTCATTCCAAGACCGCCAAAGTTATTGTTAATGGCATTGAACAAAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGCTAGCTGAGTTTGATGATGGCAAGCGCAGTTGTCGTAGACGCCTAGCTGGACACAATGAACGTCGAAGGAAGCCTCAGTTTGATTACATCTCTGGTAAACCACAGAAGATACTGCAGACATGTCAAGGTGCCAAATATTTTGGGGATTCAACACAAAAGAGACCCCAGTTTTCCTTTCACGACATGTTTCAAAGCAATCAGACTGGACACATCAAGTTCGAAGATGAATCAACTTATAGTTCTCAATTTGCAGTACCCATCATAACAAATGGTCAAGAGTTATCCAGGGCCTCCAACTCCAGAAGTTGTGCTCTCTCTCTTCTGTCAGCTCAGTCACACGATCTATCACGCAACTTAGCTGGTTCCCTTATTTCTCAAGGCATCTGCACGCAGCACAGTGATGGTCAAGTTCCTGAAACACCTTTTGGGATAAGATCTCTGGATAAATATGTCCCAAGTCAGTCCTTTTCGTGTGAGATAAACTCCATGGAAGTTACCAAGAACAGACCCATAATACCTTTTGATGTTGGTCATCATGCTCTTCAACTTGAACTTTATGAAGATGGTGATACTAACAAATCATCAAGTAAACATAGCTCCACCGTTGATCTGTTTCAATTGTCTTCGCATCTTCAAAGGGTGGAGCATCAGAGAAATTCTGTTCAAGTGAAGCACGAAAACAAGGACGGCTGCTTTTTTCCATCCATTTAA 1419 0.4073 MESWSYASEERSYLFSDEMDFSLDAYIRSRRAMVEWDNNNNNKASYIFEKDGFISDKEVIKSVEFVDLGFPDLFRRPVHGVGQPLEASNYEHDSDSSKKVNSSTHVIALNSPLGEVESEPTRHPCSVVESKSHDSSLIDLKLGRLGDCNDSSSDKNDNEGFTFQPMHVSSLTKRARTSSLPTQTPVCQVYGCNKDLSSSKEYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYISGKPQKILQTCQGAKYFGDSTQKRPQFSFHDMFQSNQTGHIKFEDESTYSSQFAVPIITNGQELSRASNSRSCALSLLSAQSHDLSRNLAGSLISQGICTQHSDGQVPETPFGIRSLDKYVPSQSFSCEINSMEVTKNRPIIPFDVGHHALQLELYEDGDTNKSSSKHSSTVDLFQLSSHLQRVEHQRNSVQVKHENKDGCFFPSI 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1020 472 ProSiteProfiles Zinc finger SBP-type profile. 184 261 IPR004333 GO:0003677
Acco12g1020 472 FunFam Squamosa promoter-binding-like protein 14 178 248 - -
Acco12g1020 472 Pfam SBP domain 187 260 IPR004333 GO:0003677
Acco12g1020 472 SUPERFAMILY SBT domain 185 266 IPR036893 GO:0003677|GO:0005634
Acco12g1020 472 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 136 278 IPR044817 GO:0003677
Acco12g1020 472 Gene3D - 178 248 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1020 Acco-ChrAcco12 10625286 10628241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1020 138 470 SBP-box Gene Family AT1G69170 40.845 7.24e-64 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Acco12g1020 SBP 3e-31 No_clan