Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g1011 ATGCCCAGCTCGAGGCAATCCTTCTGCATCTCTTCCTCCTCTTCCTCTCCTTTGTTTTGCATCGTTCTCTTTCATTCCATTTTTCTCTATGGTTTAGCATTCTCTGCAAATCATGAAGCATCTGTTCTCTTCTCTTGGCTTCACAGCTCTGCTTCACCACCACTTCCATCTTTCTCCAACTGGAACATTCTTGACGCCAACCCATGCAATTGGACCTTCTTAACATGTTCCCCACAAGGTTTTGTCACTGAAATCAATATACAATCCATCCCTCTACAGCTTCCTTTGCCATCCAATCTCTCTTCCTTTCTCAATCTTCAAAAGCTTGTCATTTCTGATGCCAATCTTACTGGAACCATCCCTATCAACATTGGTGACTGCTCTGCCCTCACTCTCATTGACCTTAACTCCAACAATCTTGTTGGTTCTATTCCTTCAAGTATAGGCAAACTTCAAAACTTAGAGAGCTTGTCTCTGAACACAAACCAGCTTACAGGGAAAATCCCACTTGAGATAGGAAACTGCATTAGTCTTAAAAGTCTCATCCTTTTTGATAACCAGCTAAGTGGTTTTATCCCACCTGAGATAGGAAAGTTGTCAAAACTAGATATTCTTAGAGCAGGAGGAAACAAAGACTTAGTTGGGAAAATCCCAGAAGAGATTGGAGAATGCAGAAATTTAACTGAGCTGGGGCTGGCTGATACTGGTTTATCAGGTTCATTGCCAGCTTCATTGGGAAAACTGAGCAAGCTTCAAACTTTGTCCATCTACACTACAGTGCTATCTGGTGAGATTCCAGCTGAGTTAGGTAATTGCTCTGAACTTGTTAATTTATTCCTGTATGAGAATAGTCTATTTGGGTCTATTCCACCTGAGCTGGGTAAGCTCCAAAAGCTGGAACAATTATTTTTATGGCAGAATAGTCTTGTGGGAGCTATCCCAGAAGAGATTGGAAACTGTTCAAGATTGAAAAGAATTGATCTTTCTTTGAATTCTCTATCTGGCACTATCCCTTTATCTTTTGGGGCTCTGCTAGAACTTGAGGAGTTTATGATAAGTGATAATAATGTGTCTGGGTCAATACCTCCAAGTCTTTCAAATGCCTTATTTCTGCAACAGCTTCAGGTTGACACAAATCAGCTCTCAGGTTTGATCCCCACAGAGCTTGGGAGGTTATCAAAGCTCACAGTTTTCTTTGCTTGGCAAAACCAACTTGAAGGAAGTATTCCTTCTAGTCTGGAAAATTGTAGTAACCTACAAGCACTAGATTTGTCACACAATGAACTCACTGGTAGCATTCCTCCTGGCCTATTTCAACTTCAAAACCTTTCAAAATTGCTCTTGATTTCTAATGATATTTCTGGTTCAATCCCATTGGAAATAGGCCTTTGTAGTTCTCTTATAAGACTGAGACTTGGGAAGAATAGGATTACTGGTGTGATCCCTAAGTCAATAGGGAGCCTAAAAAATCTGAACTTTTTAGACCTCAATGAGAATCACCTTTCTGGGCAGGTCCCAGATGAGATTGGAAACTGCACAGAACTGCAAATGATAGATTTCAGTGGCAACAATTTAGACGGTCCATTGCCTAATTCCTTGTCATCACTATCTTTGCTCCAAGTATTTGATGGATCTTCAAACAGATTTTCAGGTCACATACCAGAAAGTTTCAGCCGTCTTGTTTCACTAAATAAACTAATCCTGGGCAGAAACTTGTTTTCCGGACCGATTCCTGCATCATTGAGACAATGTTCAAGTCTCCAAATGCTTGATCTTAGTGGCAATGAGCTCACTGGAAGCATTCCAGCAGAGCTGGGTCATATAGAGAATCTTGAAATTGCTCTTAACCTTAGTTTCAATTCTCTAAGTGGCCCAATTCCAGATCAAATCTCTGCTCTTACCAAGCTTTCTATACTAGACCTTTCTCATAACCAGTTAGAGGGAGGTTTAAACTCACTTGCAGGCCTAGATAATCTTGTCTCTCTCAATATTTCCTACAACAATTTCACAGGTTATCTACCAGATAATAAGCTTTTCAGGCAATTATCTCCAAAGGACCTAACTGGGAATCAAGGCCTTTGCTCATCTGGTCAAGACTCATGCTTTGTGAGTGCTTCAAGCATGACACTGAATGGAAGTGAGGCGAGGAAGTCGCGAAGGATTAAGCTGGCTCTTGGTTTCTTAGTAGTCTTAACAGTACTACTAACAATAATGGGGATAATTGCAGTGATAAAGGCAAGAAGAACCATTAGAGACGATGATTCAGAACTAGGGGACTCATGGCCATGGCAATTCATTCCATTCCAAAAGCTGAACTTTTCAGTGGAGCAAGTGTTGAGACGTTTAGTTGAAGGGAATATAATTGGAAAAGGATGTTCCGGTGTTGTTTATCGTGCTGAAATGGACGACGGTGAAGTCATAGCTGTGAAGAAACTGTGGCCTACAACAATGGATGTAAGAGAAGGATTCAAGGATGATAAAAGTGGAATTCGCGACTCATTCTCAACTGAGGTGAAAACACTTGGCTCGATCCGTCATAAGAACATTGTTAAATTCTTGGGGTGTTGTTGGAATAAAAACACAAGATTGCTGATATATGATTATATGGCAAATGGAAGTCTAAGTAGTCTTCTTCATGAGAGGACAGGGAATTGTCTGGAATGGGAACTCAGGTACAGAATTCTGTTGGGAGCTGCAGAAGGCCTTGCTTATTTGCACCATGATTGTGTGCCTCCCATAGTACATAGAGACATCAAAGCCAATAACATACTCATTGGCATTGAGTTTGAGCCTTATATTGCAGACTTTGGCTTGGCTAAGCTAGTTGATGATGGTGGCTTTGGTCGTTCCTCCAATACAGTCGCTGGTTCTTATGGATACATTGCTCCAGAATATGGTTACATGATGAAGATCACGGAGAAGAGCGATGTTTACAGTTACGGTGTAGTTATGTTGGAAGTCTTGACGGGCAAGCAACCGATAGATCCAACGATACCAGAGGGCCAACATGTGGTTGATTGGGTGAGACAGAAAAGAGGGGTTGCAGTGCTTGACTTGAGCTTACTATCAAGACCAGAATCAGAAATAGAGGAAATGATGCAGGCACTAGGCATAGCCTTGTTGTGTATAAACTCATCCCCAGATGAGAGGCCAACAATGAAAGATGTTGCAGCAATGCTAAAAGAGATCAAACAAGAAAGAGAAGACTATGCCAAAGTTGATGCACTTTTAAAGGGATCTCCTGCAAATAATGATGTCAAAGCAGCAGCAGCATCTTCATCTTTGCCAGCTTTGAAGAATTTGTACCGGGAAGGCAATAATAACACGATCTTCTCTGTCTCTTCACTGCTTCATTCATCTTCTTCTTCCAGTGTCAAGGTGGGTTTGAAGTGA 3393 0.4129 MPSSRQSFCISSSSSSPLFCIVLFHSIFLYGLAFSANHEASVLFSWLHSSASPPLPSFSNWNILDANPCNWTFLTCSPQGFVTEINIQSIPLQLPLPSNLSSFLNLQKLVISDANLTGTIPINIGDCSALTLIDLNSNNLVGSIPSSIGKLQNLESLSLNTNQLTGKIPLEIGNCISLKSLILFDNQLSGFIPPEIGKLSKLDILRAGGNKDLVGKIPEEIGECRNLTELGLADTGLSGSLPASLGKLSKLQTLSIYTTVLSGEIPAELGNCSELVNLFLYENSLFGSIPPELGKLQKLEQLFLWQNSLVGAIPEEIGNCSRLKRIDLSLNSLSGTIPLSFGALLELEEFMISDNNVSGSIPPSLSNALFLQQLQVDTNQLSGLIPTELGRLSKLTVFFAWQNQLEGSIPSSLENCSNLQALDLSHNELTGSIPPGLFQLQNLSKLLLISNDISGSIPLEIGLCSSLIRLRLGKNRITGVIPKSIGSLKNLNFLDLNENHLSGQVPDEIGNCTELQMIDFSGNNLDGPLPNSLSSLSLLQVFDGSSNRFSGHIPESFSRLVSLNKLILGRNLFSGPIPASLRQCSSLQMLDLSGNELTGSIPAELGHIENLEIALNLSFNSLSGPIPDQISALTKLSILDLSHNQLEGGLNSLAGLDNLVSLNISYNNFTGYLPDNKLFRQLSPKDLTGNQGLCSSGQDSCFVSASSMTLNGSEARKSRRIKLALGFLVVLTVLLTIMGIIAVIKARRTIRDDDSELGDSWPWQFIPFQKLNFSVEQVLRRLVEGNIIGKGCSGVVYRAEMDDGEVIAVKKLWPTTMDVREGFKDDKSGIRDSFSTEVKTLGSIRHKNIVKFLGCCWNKNTRLLIYDYMANGSLSSLLHERTGNCLEWELRYRILLGAAEGLAYLHHDCVPPIVHRDIKANNILIGIEFEPYIADFGLAKLVDDGGFGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVMLEVLTGKQPIDPTIPEGQHVVDWVRQKRGVAVLDLSLLSRPESEIEEMMQALGIALLCINSSPDERPTMKDVAAMLKEIKQEREDYAKVDALLKGSPANNDVKAAAASSSLPALKNLYREGNNNTIFSVSSLLHSSSSSSVKVGLK 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g1011 1130 SMART LRR_sd22_2 584 613 - -
Acco12g1011 1130 SMART LRR_sd22_2 512 538 - -
Acco12g1011 1130 SMART LRR_sd22_2 633 658 - -
Acco12g1011 1130 SMART LRR_sd22_2 151 172 - -
Acco12g1011 1130 SMART LRR_sd22_2 392 418 - -
Acco12g1011 1130 PRINTS Leucine-rich repeat signature 419 432 - -
Acco12g1011 1130 PRINTS Leucine-rich repeat signature 633 646 - -
Acco12g1011 1130 Gene3D Ribonuclease Inhibitor 35 209 IPR032675 -
Acco12g1011 1130 Gene3D Phosphorylase Kinase; domain 1 768 868 - -
Acco12g1011 1130 FunFam Putative LRR receptor-like serine/threonine-protein kinase 614 699 - -
Acco12g1011 1130 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 435 529 - -
Acco12g1011 1130 SUPERFAMILY L domain-like 45 405 - -
Acco12g1011 1130 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 211 434 - -
Acco12g1011 1130 ProSiteProfiles Protein kinase domain profile. 782 1063 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g1011 1130 Gene3D Ribonuclease Inhibitor 446 704 IPR032675 -
Acco12g1011 1130 Gene3D Ribonuclease Inhibitor 210 445 IPR032675 -
Acco12g1011 1130 FunFam Nuclear pore complex protein NUP107 36 192 - -
Acco12g1011 1130 SUPERFAMILY Protein kinase-like (PK-like) 759 1060 IPR011009 -
Acco12g1011 1130 ProSitePatterns Serine/Threonine protein kinases active-site signature. 913 925 IPR008271 GO:0004672|GO:0006468
Acco12g1011 1130 ProSiteProfiles Leucine-rich repeat profile. 418 440 IPR001611 GO:0005515
Acco12g1011 1130 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 869 1078 - -
Acco12g1011 1130 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 765 868 - -
Acco12g1011 1130 ProSitePatterns Protein kinases ATP-binding region signature. 788 811 IPR017441 GO:0005524
Acco12g1011 1130 Pfam Leucine Rich Repeat 418 437 IPR001611 GO:0005515
Acco12g1011 1130 SUPERFAMILY RNI-like 361 675 - -
Acco12g1011 1130 PANTHER UNNAMED PRODUCT 371 997 - -
Acco12g1011 1130 Gene3D Transferase(Phosphotransferase) domain 1 869 1080 - -
Acco12g1011 1130 SMART LRR_typ_2 296 320 IPR003591 -
Acco12g1011 1130 SMART LRR_typ_2 633 655 IPR003591 -
Acco12g1011 1130 SMART LRR_typ_2 151 175 IPR003591 -
Acco12g1011 1130 SMART LRR_typ_2 488 512 IPR003591 -
Acco12g1011 1130 SMART LRR_typ_2 416 440 IPR003591 -
Acco12g1011 1130 SMART LRR_typ_2 585 608 IPR003591 -
Acco12g1011 1130 SMART LRR_typ_2 656 681 IPR003591 -
Acco12g1011 1130 SMART LRR_typ_2 560 584 IPR003591 -
Acco12g1011 1130 Pfam Protein tyrosine and serine/threonine kinase 785 1059 IPR001245 GO:0004672|GO:0006468
Acco12g1011 1130 Pfam Leucine rich repeat 545 597 IPR001611 GO:0005515
Acco12g1011 1130 Pfam Leucine rich repeat 466 525 IPR001611 GO:0005515
Acco12g1011 1130 SMART serkin_6 782 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco12g1011 1130 FunFam LRR receptor-like serine/threonine-protein kinase 534 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g1011 Acco-ChrAcco12 10438108 10441909 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g1011 33 1079 Receptor kinase-like Gene Family AT5G56040 48.870 0.0 959
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Acco12g1011 PK_Tyr_Ser-Thr 1.4e-42 CL0016