LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco12g0980	ATGGCAACTCTTCCCTTGCCTCCAACCTATCCCTCCCTCTTCCCTTCAGTGAAGATGGCAACAGAGGTGAAGAGTCCAAGTCTGTTGAACCCGAGAAGGAGCGGAAGGAATAAGGTACTGATGAACCTGTACAAGGCAGTCAGATTTCAGTTGCCTTGCAAATGCGGACTATTTTCTTTTGCAGCTGATACCCTTAGACAGTTTGAGTCTCTTCCAGATGGCCGGACCTTGGTTTCTGAAAATGAAATCTTTGAATTGGGTTTCTTCAGCCCAGAAACAGTTGAACACAATGAAGCTAATGGAAATAAGACAAAGGTGATTGCTGTAATAGTGACCACTGTATTGGCTGTTATGCATGTGATGCTTTTCACTTTGTTTCACCTTTACAAGCACAGAAGAAACTCTACAGGTTCTGAAGGTGAAGATGGCAACAAAGGTGAAGAGTCCAAGCCTGTTGAACCCGAGTTGTGCTCCTTAGTTTTGAGGGGAGGAGGTAGTGGTTGTGCTATGTGGTTTGGTGATTTAATTGATACAACTCAGGTTCCCTTTGATGACCAAGATTTATATATTCGCCTTGCATCTCCAGAAACAGCTGAACACAATGAAGCTAATGGAAATAAGACAAAGATGATTGTTGTAATAGTGACCTCTGTATTGGTTGTTATGCATGTGGTGCTTTTCACTTTGTTTCACCTTTACAAGCGCAGAAGAAACTATATAGCAAACAAGGAAGAAGGCTCTGACGGAAATATGGAGCTAAAAACCTTAATAGTAGAAAACAGTGAAGAAGGCTATGAAGGAAACATGGACCTACATATATATGACCTTGCAGTAATAGCCAATGCTACTAATAACTTCTCATCAGACAACAAGCTTGGTCAAGGTGGTTTTGGTTCTGTATACAAGGGTATACTTGCAGATGGACAAGAAATTGCGGTGAAACGACTTTCACCAAATTCTTCCCAAGGTCTCAATGAATTCATGAATGAAGTTAAATTGTGTGCCAAACTTCAACACCGTAATCTTGTTAAGGTTCTTGGTTGCTGCATTCAAGGAGAGGAGAGAATGCTCATATATGAATACATGCCCAACAAGAGCTTAGATTCATTTATTTTTGGTTCTGAAGGTAAACTTCTTGATTGGTCCAAGCGCTTTCACATTGTTCGTGGAATTGCTCGGGGGCTTATGTATCTTCATCAAGATTCTAGATTAAGAATTGTCCATAGAGATCTTAAAGCAAGTAATATATTATTGGATAGTGAATTGAATCCAAAAATATCAGATTTTGGTTTGGCAAGGATATTTGGAGGAGATCAAGTTGAAGCCAATACAAGGCAAATAGTTGGTACATACGGATATATGGCTCCTGAATATGCAATTTATGGACTATTCTCCATCAAATCAGATGTGTTCAGCTTTGGAGTATTACTATTAGAAATCTTGACTGGCATGAAAAACAGGGGGCCCTTCTTGCCAAGCCAAAGTGTTAATCTTATTGGACATGCATGGAGGTTTTGGAAGGAGGGAATCCCCCTAAAGCTTCTTGACAAACATTTGGAGCAGTCTTATGTTGAGTCAGAAGTATCGCGATGCATCCGCATCAGTCTTCTTTGTTTGCAATATCATGCTGATGACAGGCCAAACATGACATCTGTGGTTATAATGTTGAACAGTGAGGGTGTCTTGCCTGAGCCTAAAGAACCTGGTTTCCTTTTGGAAAACATCCCAATTAGGGTAGAATCTACTTACAATGATGCATCTCCTTCAAATAATGAAATATCTATAACCGTATTAAAAGCCAGGTAA	1806	0.4009	MATLPLPPTYPSLFPSVKMATEVKSPSLLNPRRSGRNKVLMNLYKAVRFQLPCKCGLFSFAADTLRQFESLPDGRTLVSENEIFELGFFSPETVEHNEANGNKTKVIAVIVTTVLAVMHVMLFTLFHLYKHRRNSTGSEGEDGNKGEESKPVEPELCSLVLRGGGSGCAMWFGDLIDTTQVPFDDQDLYIRLASPETAEHNEANGNKTKMIVVIVTSVLVVMHVVLFTLFHLYKRRRNYIANKEEGSDGNMELKTLIVENSEEGYEGNMDLHIYDLAVIANATNNFSSDNKLGQGGFGSVYKGILADGQEIAVKRLSPNSSQGLNEFMNEVKLCAKLQHRNLVKVLGCCIQGEERMLIYEYMPNKSLDSFIFGSEGKLLDWSKRFHIVRGIARGLMYLHQDSRLRIVHRDLKASNILLDSELNPKISDFGLARIFGGDQVEANTRQIVGTYGYMAPEYAIYGLFSIKSDVFSFGVLLLEILTGMKNRGPFLPSQSVNLIGHAWRFWKEGIPLKLLDKHLEQSYVESEVSRCIRISLLCLQYHADDRPNMTSVVIMLNSEGVLPEPKEPGFLLENIPIRVESTYNDASPSNNEISITVLKAR	601

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco12g0980	601	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	362	564	-	-
	Acco12g0980	601	SUPERFAMILY	Protein kinase-like (PK-like)	270	562	IPR011009	-
	Acco12g0980	601	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	251	361	-	-
	Acco12g0980	601	Gene3D	Transferase(Phosphotransferase) domain 1	362	561	-	-
	Acco12g0980	601	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	406	418	IPR008271	GO:0004672\|GO:0006468
	Acco12g0980	601	ProSitePatterns	Protein kinases ATP-binding region signature.	292	314	IPR017441	GO:0005524
	Acco12g0980	601	ProSiteProfiles	Protein kinase domain profile.	286	562	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco12g0980	601	Gene3D	Phosphorylase Kinase; domain 1	251	361	-	-
	Acco12g0980	601	CDD	STKc_IRAK	292	557	-	-
	Acco12g0980	601	Pfam	Protein tyrosine and serine/threonine kinase	289	553	IPR001245	GO:0004672\|GO:0006468
	Acco12g0980	601	Pfam	Domain of unknown function (DUF3403)	558	601	IPR021820	GO:0004674
	Acco12g0980	601	SMART	serkin_6	286	556	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco12g0980	601	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	163	581	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco12g0980	Acco-ChrAcco12	10039192	10058186	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco12g0980	207	575	Receptor kinase-like Gene Family	AT4G05200	50.133	8.05e-124	379

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Acco12g0980		PK_Tyr_Ser-Thr	4e-50	CL0016