Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0968 ATGGAGCCCGATATTTTTTCCTGGATATTAGAGTTTCTTCTCAGGAGTTCCGTTCCAGATTTACTTCTCAAGAAAGTGTTGAAAAGTTTGCCTCTCTCTCGCATCGATTCGCGGCTATGGAAAACACTGGCTCTCAGATCTATTCAATCTGAGGTGGCTACGGCATCATTTACAGAAAACTCATTGGAATGTTTCGAGGTCATTGAAGAAATCGACAGGCTTGATGGCATTGCAATCACACAAGCCATGAAGGAGGCATACTGTGCTGTTGCTGTAGAATGCAGTGTCAGGCACCTCGGGGCATGCCCAGATAAGAACACCCGCGGCTTGTTTGACGATGCTATCAGTAGGATTTGGAGGGGCCGTGTTCGGCAAATGATGGAGGCGATGGCGTTAGGGAGGAGGAGTAACTTATTTACGCCGGAGTTGATAGGGTGGAAGGATCTCTTAGAGTCTGCACGTTGGGACGCGGAGGTGTGCGGGAGATTATTGAACATGAGTACCAGACAAAATGCAATCGATGAGGTTAGGGTTTATCTAAAAGAAACTTGGGAATCGATGGGCCCTTCTTTTCTTGAGTTAGCAGATATATTGTCGCAAGACAAGGGTTTGGGAAGTTCAAGGGGCGATCAGACGGGTGACGCGGAGCTTGCTGCTAATATACCCAATGAAGGTTGTGACAGGGCTGTTTCTGAATCTGTTTTGGTCCCTGATCAGATGGATATTTGTAAAGAAGGGCTACATTGTTCAACTAACACAACTCAGCAGGGTTTCGTTGTGTCTGATGGAAGTGCATTGAATAATGCTGCAATCTGCATGGAGAAGGCGCCAGTGGCAGGTGGGAATCAGCAATTGGGAAAGAGAGTCTTGCCTCAAAGGATAAATGAAGCAATTCAAAAGGGCAAGCTGCCACTTGAATGTAATCATGCTGTGCCCTCTACACGTAGAGGAGTTAAGATTATTGATGCTGAGGAAGAAGGGCCAGCGACTGTGTGTAGCAAAGATCACAATGCATCTAATATTCAAGTTGAAAAACTTCGGGAATCTCTCATGTCAAGTTCTTTGGAGTTGCGAGCATTGGTTAAGGATCCCCTTCCTGATGCATTACATAAATCTGACATTGTAAGATCTGAATTAGCAACAAAGGGTGTGAATCATGAGCCTCCTTTAGAAAAGCAGAGTACAGTTGTAAATGTACCAGAACAAAATACTTGCAGGACCATGGTGCTTTATCAACCTGTCAATGATATCTTAAAGAAACAGTCTGCTGCTAATTGCAGTAATGTCCAACGTCCCAGCTGGATGGAACGAAATAGTACTGCCCATACTTTTGAGTGGGATGATCCATTTGATGACTTGCCTGGGGGAAGCCCTAAGAAAAGGAGGAGAAAGGCAAGATGGAGTTCTGAAGAAGAGGATGCATTAAGGGATGGTGTAAAGAAGTTTGGCAAAGGAAACTGGAAGCCAATCCTAAGATTTCACAGTGAGATATTTGCAAAGGCAGGAAGAACAGAAGTTGATTTGAAGGACAAATGGAGAAATTTGACACGTTCGTCATAG 1560 0.4462 MEPDIFSWILEFLLRSSVPDLLLKKVLKSLPLSRIDSRLWKTLALRSIQSEVATASFTENSLECFEVIEEIDRLDGIAITQAMKEAYCAVAVECSVRHLGACPDKNTRGLFDDAISRIWRGRVRQMMEAMALGRRSNLFTPELIGWKDLLESARWDAEVCGRLLNMSTRQNAIDEVRVYLKETWESMGPSFLELADILSQDKGLGSSRGDQTGDAELAANIPNEGCDRAVSESVLVPDQMDICKEGLHCSTNTTQQGFVVSDGSALNNAAICMEKAPVAGGNQQLGKRVLPQRINEAIQKGKLPLECNHAVPSTRRGVKIIDAEEEGPATVCSKDHNASNIQVEKLRESLMSSSLELRALVKDPLPDALHKSDIVRSELATKGVNHEPPLEKQSTVVNVPEQNTCRTMVLYQPVNDILKKQSAANCSNVQRPSWMERNSTAHTFEWDDPFDDLPGGSPKKRRRKARWSSEEEDALRDGVKKFGKGNWKPILRFHSEIFAKAGRTEVDLKDKWRNLTRSS 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0968 519 Gene3D - 457 518 - -
Acco12g0968 519 Pfam Myb-like DNA-binding domain 466 515 IPR001005 -
Acco12g0968 519 ProSiteProfiles Myb-like domain profile. 459 516 IPR001005 -
Acco12g0968 519 CDD SANT_TRF 466 517 - -
Acco12g0968 519 MobiDBLite consensus disorder prediction 445 474 - -
Acco12g0968 519 SMART sant 463 518 IPR001005 -
Acco12g0968 519 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 459 519 IPR017930 -
Acco12g0968 519 PANTHER MYB TRANSCRIPTION FACTOR 1 517 - -
Acco12g0968 519 SUPERFAMILY Homeodomain-like 461 517 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0968 Acco-ChrAcco12 9874052 9877032 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0968 467 515 Single Myb Histone (SMH) Gene Family AT1G15720 59.184 1.82e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Acco12g0968 Myb_DNA-binding 7e-09 CL0123