Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0965 ATGGCAGCTGAAGCTCCCTTCAAGAACCACAAACCTCGCGGTCGCGGTTCTCAGCCGAGGCGGTGGAATCAAGGTGGAAAGCTCAAGATCCTGTTCGTTCCGAAATCTGAATTGGATTCTTCTAATTCTGAGCTTGATCGTTCGCTTGACGAATTAAGCATTCGCAAGGACTTTGATGTAGCGAGAGAATTGGACCCGGTGAACAAGAACGGTTCGGAGCTGAAGGATGAAGTAGAAAATAAGGGAGAAGAGAATCATGCGCATGATTCAGACAAGGAAGGGAATAGTGTTTACAGTAGACTAGATAAGCAAATGAGGGATGTAGGGGAGCTGGAATTGTCAGAGGAACAGCTGAGTGTTAATGATCAATTGCAAGGAGATGAGTTACTTGCTTTGGAGGCAATTTATGGGGAAAATGTCCTCGAACTCGAGAGATGGAAAGGTCTCCGTTGTTTTCAGATACACATACGCATTGAAGTTCTAGATGCAATTGGCATCACAGCTAAGCTGAATTCTTCTAATGGACACAAGACTGCAAGCAGCAATGCAGATGACTTCTCATACTCTTTTAAAGTCAAATATCTTCCACCTATTATTTTGACATGTTTATTGCCAAAGTCATACCCAAGCCATCAACCGCCTCATTTTATCATTTATGTTAAGTGGTTGGACTCCACAAGAATTTCTAGTTTATGCTCCATGTTAGATTCAATATGGACCGAGCAGCAAGGGCAGGAAGTTATTTACCAGTGGGTTGAATGGTTACATGGTTTTTCTCTATCTCATCTGGGATTTGATAAAGAGATAACTCTTGGTTCTCATGCAATGAAACATGTTGGAGATGAGCGTGCAGTCTCAGGAGCTGTGTCCCTAGATTTTGATGTTCCTTCATTACGAAGTTACAACAATGAGAGACATCATGAGAACTTCCTTAAAGAAATGCATGAATGTGGCATTTGCTTCACTGTATATGCAGGTACAGAGTTTGCTCAGTTACCATGTCAGCATTTTTTCTGCTTAAAATGCTTGCAGACATTTGCTCAGATGCATGTAAAAGAGGGAACCCTCAGTAATCTTCAATGTCCCGGTTCAAAATGTGCTGTTATGATTCCACCTGCTCTATTAAAACGCTTGCTTGATGACAAAGAGTATGAACGCTGGGAATCCTTGACGTTGGAGAAAACACTTGAATCAATGTCTGATGTTGCTTATTGCCCAAGATGTGAAACACCTGGTATAGAAGATGAAGAACAGCATGCTCAATGCTCTAAATGCTTCTTTAGCTTTTGTACCCTTTGCAGGGAGCGACGCCATGTTGGCATGCAATGCATGACCCTAGAGATGAAGCTTCAAATTTTGCAAGAGCGCCAGAATTCATCTCAGTTAAAGGGAGCTCAGAAGCTGAAGGAACGTGAAATGATAAATGAGATGCTCAGCGTCAAAGAAATTCGTCGTGATTCTAAGCTGTGCCCTTCTTGTCAAATGGCTATTTCCCGAATTGAAGGTTGCAACAAAATGGTGTGTGGTAATTGCGGCGAATATTTCTGTTACCGCTGCAACAAAGCACTTGATGAATCTGATCCTTACGGACATTTCAGGGATGGGTCCTGTGAATTGTTCCCACAAGAAATGGTGGAGGCTTGGCAAGAACGCATAAACCACCGTCAGGTAGTGGCACAGATACAAGCAGAACTCCTTAATGAACGAGGCCAACGTTGTCCTAATTGCCGTCAATTTAATGCAAAGGTTGGAAACAATAACCACATGTTTTGCTGGGCATGCCAATGCCATTATTGCTACTCTTGCAAGCAGATTGTTAGGCGCAGCGCGCAGCATTATGGACCCAAGGGTTGCAAACAGCACTCCGATGATTAG 1875 0.4304 MAAEAPFKNHKPRGRGSQPRRWNQGGKLKILFVPKSELDSSNSELDRSLDELSIRKDFDVARELDPVNKNGSELKDEVENKGEENHAHDSDKEGNSVYSRLDKQMRDVGELELSEEQLSVNDQLQGDELLALEAIYGENVLELERWKGLRCFQIHIRIEVLDAIGITAKLNSSNGHKTASSNADDFSYSFKVKYLPPIILTCLLPKSYPSHQPPHFIIYVKWLDSTRISSLCSMLDSIWTEQQGQEVIYQWVEWLHGFSLSHLGFDKEITLGSHAMKHVGDERAVSGAVSLDFDVPSLRSYNNERHHENFLKEMHECGICFTVYAGTEFAQLPCQHFFCLKCLQTFAQMHVKEGTLSNLQCPGSKCAVMIPPALLKRLLDDKEYERWESLTLEKTLESMSDVAYCPRCETPGIEDEEQHAQCSKCFFSFCTLCRERRHVGMQCMTLEMKLQILQERQNSSQLKGAQKLKEREMINEMLSVKEIRRDSKLCPSCQMAISRIEGCNKMVCGNCGEYFCYRCNKALDESDPYGHFRDGSCELFPQEMVEAWQERINHRQVVAQIQAELLNERGQRCPNCRQFNAKVGNNNHMFCWACQCHYCYSCKQIVRRSAQHYGPKGCKQHSDD 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0965 624 SUPERFAMILY RING/U-box 385 448 - -
Acco12g0965 624 SUPERFAMILY RING/U-box 312 399 - -
Acco12g0965 624 Gene3D - 461 569 - -
Acco12g0965 624 Pfam RWD domain 124 256 IPR006575 GO:0005515
Acco12g0965 624 FunFam RBR-type E3 ubiquitin transferase 312 396 - -
Acco12g0965 624 ProSiteProfiles Zinc finger RING-type profile. 317 362 IPR001841 -
Acco12g0965 624 CDD BRcat_RBR_RNF14 396 447 - -
Acco12g0965 624 SUPERFAMILY RING/U-box 562 621 - -
Acco12g0965 624 MobiDBLite consensus disorder prediction 65 97 - -
Acco12g0965 624 CDD RING-HC_ITT1-like 311 370 - -
Acco12g0965 624 Pfam IBR domain, a half RING-finger domain 480 523 IPR002867 GO:0008270
Acco12g0965 624 Pfam IBR domain, a half RING-finger domain 385 443 IPR002867 GO:0008270
Acco12g0965 624 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Acco12g0965 624 SUPERFAMILY UBC-like 119 258 IPR016135 -
Acco12g0965 624 SMART ring_2 317 364 IPR001841 -
Acco12g0965 624 SMART ring_2 573 602 IPR001841 -
Acco12g0965 624 SMART ring_2 490 519 IPR001841 -
Acco12g0965 624 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 117 532 IPR031127 GO:0004842|GO:0016567
Acco12g0965 624 CDD Rcat_RBR 571 604 - -
Acco12g0965 624 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 400 IPR013083 -
Acco12g0965 624 SMART ibrneu5 472 537 IPR002867 GO:0008270
Acco12g0965 624 SMART ibrneu5 385 443 IPR002867 GO:0008270
Acco12g0965 624 Gene3D Ubiquitin Conjugating Enzyme 113 264 IPR016135 -
Acco12g0965 624 MobiDBLite consensus disorder prediction 1 26 - -
Acco12g0965 624 ProSiteProfiles RWD domain profile. 127 262 IPR006575 GO:0005515
Acco12g0965 624 SMART RWD2001b 127 262 IPR006575 GO:0005515
Acco12g0965 624 FunFam RBR-type E3 ubiquitin transferase 458 567 - -
Acco12g0965 624 CDD Rcat_RBR_RNF14 475 540 IPR047548 GO:0008270
Acco12g0965 624 ProSiteProfiles TRIAD supradomain profile. 313 542 IPR044066 -
Acco12g0965 624 SUPERFAMILY RING/U-box 476 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0965 Acco-ChrAcco12 9839636 9844480 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0965 316 547 C3H Transcription Factor Family AT2G31770 26.250 2.02e-17 84.0