Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0918 ATGCGGGGAGAGAAGGCAGTGTTAAAGAAAGGCCCATGGACTCGTGAGGAAGATGAGAAGCTCATGGCTTACATTCAACAACATGGCCATGGAAGTTGGTGTTCCTTGCCTGCTAAAGCTGGACTTGAAAGATGTGGGAAGAGCTGCAGACTGAGATGGATTAATTACCTAAGGCCTGACATCAAACGAGGCAACTTCAGTTTGCAGGAAGACCGAACCATTATTCAACTTCATGCTCTCCTTGGAAGCAGATGGTCAGCTATAGCACTTCACCTGCCAAAAAGAACAGACAACGAGATCAAAAACCACTGGCACATCCACCTCAAGAAGAGGCTCACCAAAATGGGCATAGACCCCACCACTCACAAACCCATGAACGACGCCGTACACGGCCACGCAGCCAACCTCAACCATATGGCTCAGTGGGAGATTGCTCGGCTCCAAGCCGAAGCCAGACTGCTGGCCAGACGATCCAAGCTGCGGTTCCAGATCAACCAGCTCGGCTCCTTCTCTTACCAACCTTCACCGGCTCGACTTGTCCTCAACAAGATCACACCTCCGCCGTCCCTGCCTCCGTGCCTGGACGTGCTCAAGGCTTGGCAGAATTCATGGTCGTCGTCGATGACGTCCAAGTTTTCAACTCCGACGACGATTACCACTCCTGAAAACATATATGCCATGATGCTCGCCACCAACGACGACCTCAAGTACAACAGTATTGATAATAGTTACATGACCACCTTTGGACTTATCAATGAAAGTTTACTTCCTTCTTCCAATTGCACCAACGCGGCACCGGAAAACTCAGCGGGAAGCTTATTGGGATACGGAGACGATATTATGGTGGCCGTGGAAGCATTTAGATCAGAAGGGTATAACTGTAATAATTCCATGCAAGGTCTGCGCAATAATATTGAGGATGTGTTGGTGCATGGATTCAATAATGAGAACTCACCACAACAACAAAACCAGCTGGGAATAGTCTTAAATGGTGGGGAAGAAGGAAGCACCAACTTTGAGGATAAGCATTACTGGGAAACCATACTCAACTCGGTCAATGATTTTCCCTCTGATCACCAGCATTTGCCCTGTCTCACCTAA 1101 0.4859 MRGEKAVLKKGPWTREEDEKLMAYIQQHGHGSWCSLPAKAGLERCGKSCRLRWINYLRPDIKRGNFSLQEDRTIIQLHALLGSRWSAIALHLPKRTDNEIKNHWHIHLKKRLTKMGIDPTTHKPMNDAVHGHAANLNHMAQWEIARLQAEARLLARRSKLRFQINQLGSFSYQPSPARLVLNKITPPPSLPPCLDVLKAWQNSWSSSMTSKFSTPTTITTPENIYAMMLATNDDLKYNSIDNSYMTTFGLINESLLPSSNCTNAAPENSAGSLLGYGDDIMVAVEAFRSEGYNCNNSMQGLRNNIEDVLVHGFNNENSPQQQNQLGIVLNGGEEGSTNFEDKHYWETILNSVNDFPSDHQHLPCLT 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0918 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 57 IPR017930 -
Acco12g0918 366 CDD SANT 65 108 IPR001005 -
Acco12g0918 366 FunFam MYB-related transcription factor 9 62 - -
Acco12g0918 366 SMART sant 62 110 IPR001005 -
Acco12g0918 366 SMART sant 9 59 IPR001005 -
Acco12g0918 366 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Acco12g0918 366 CDD SANT 12 57 IPR001005 -
Acco12g0918 366 Gene3D - 65 133 - -
Acco12g0918 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Acco12g0918 366 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 5 246 - -
Acco12g0918 366 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Acco12g0918 366 SUPERFAMILY Homeodomain-like 9 104 IPR009057 -
Acco12g0918 366 Gene3D - 9 62 - -
Acco12g0918 366 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Acco12g0918 366 Pfam Myb-like DNA-binding domain 63 105 IPR001005 -
Acco12g0918 366 FunFam MYB transcription factor 64 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0918 Acco-ChrAcco12 9325730 9327634 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0918 4 160 MYB Transcription Factor Family AT3G01140 73.620 2.19e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco12g0918 Myb_DNA-binding 8.9e-13 CL0123