Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0903 ATGACATATGACCAATCCCTCTCAATATTCCATACATGTCGTGAAGATCCTGGTGAAGACGAGGGTGCATCAGGATTTGTGGTCGATGAATTTGTTAGCTTTTTGACAGTTGCAGTTTCAGTTTATCATTTAAAGAAATCATCATTGGCCTCTTTCCCTCTTCAATTCTTGTTGGGCCTTTACATGCTAGATGTTATATCAATTTCAAGCTCTTTGCTTCGCATTTGCCTCGTTAATTCTGGTTCTGGGAGGTCGGGTTGTGTGTTCTTTTGTTGCATGTTTATGCTCACCAGTATGGGCAGGGTGAAGCTGAAGATAAAGAGGCTGGAGAACACTAATGGTCGTCAGGCCACCTATGCTAAAAGGAGAAATGGAATTATTAAAAAAGCTTCGGAATTATCTATACTGTGCGATATAGATATTTTACTTCTCATGTTTTCACCAACTGGGAGGCCAGCACTATGCAGAGGGAGGCGTAGTAACATAGAGGAGGTTATTGCAAAGTTTGCACAACTAACTCCCCAGGAAAGGGCAAAGAGGAAGTTGGAAAGTCTTGAAGCACTGAAGAAAACATTTAAGAAGTTAGACCACAATGTAAATGTAAAAGAATTTCTGGGGACAAGCACTCAAACTGCTGAGGACCTAAAGAATGAAGCCACTTTTTTGCGAACTCGTATATCTGAAATACTTACAAGATTCAGCCATTGGGCTGAACTTGATAAAGTCAACAATGTGGAACAATTGGAACAGATGGAAAAATCTCTCAGGGAGTCAATTAATCAACTTCGATTGCACAAGATGTCAGTGACTTGTCATGTGGATATTGTTCTTGGTCCCAATAATATGGAATTATTTTATCAACAATCTGACATGAACAAAGACACAGAGTGCTCTGCAAGTTCCTCCTCTTTTGGGAGTTTTGCTAGTTATCTTGGCGCATGTCAAAAACCAGATCTTTCTAATCCTGGGCAAGAAAATGGTGTCCTTAGTGATATGATTAGTGCCGCTTCTCTGAGACTACAATTAGGCGGGCAGTTTCCGTACCTGCCTTATAATTTCAATCTACAGAATGACACCAGGTTCCAGCCATCGGCAGAGATCAACCCACATGAAAACCCCATAGATTATCATCCTAATCAAAGCTTTGAGGCGCCTAGACTTGCCTTCGACTCTAACAACCATGAATGGGCTTCCACATCAGAGCCTTTTACTGTTACCACCATGTTGGATGAGTATTTGTATGCCCAGGCAAGGGCCACATTGGCACTGATTCACAACTTGTTTATTTTTGCTCTACATCAAACCAAGGAGGCTGACAGAGAACTTAAGTCACGCTTCATCAGATCTCAACAACGAGCAAAAATAGACTATAAGGATTCTGCTTCCACCCTGTTTTCTGCTGTGAAGCTTTTTATGGATCAGAAAGCATATGGCGTTTGTTCTTCCCCACATGGATGA 1458 0.4136 MTYDQSLSIFHTCREDPGEDEGASGFVVDEFVSFLTVAVSVYHLKKSSLASFPLQFLLGLYMLDVISISSSLLRICLVNSGSGRSGCVFFCCMFMLTSMGRVKLKIKRLENTNGRQATYAKRRNGIIKKASELSILCDIDILLLMFSPTGRPALCRGRRSNIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHNVNVKEFLGTSTQTAEDLKNEATFLRTRISEILTRFSHWAELDKVNNVEQLEQMEKSLRESINQLRLHKMSVTCHVDIVLGPNNMELFYQQSDMNKDTECSASSSSFGSFASYLGACQKPDLSNPGQENGVLSDMISAASLRLQLGGQFPYLPYNFNLQNDTRFQPSAEINPHENPIDYHPNQSFEAPRLAFDSNNHEWASTSEPFTVTTMLDEYLYAQARATLALIHNLFIFALHQTKEADRELKSRFIRSQQRAKIDYKDSASTLFSAVKLFMDQKAYGVCSSPHG 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0903 485 FunFam Agamous-like MADS-box protein AGL30 112 194 - -
Acco12g0903 485 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 108 152 IPR002100 GO:0003677|GO:0046983
Acco12g0903 485 Coils Coil 212 232 - -
Acco12g0903 485 PRINTS MADS domain signature 121 136 IPR002100 GO:0003677|GO:0046983
Acco12g0903 485 PRINTS MADS domain signature 101 121 IPR002100 GO:0003677|GO:0046983
Acco12g0903 485 PRINTS MADS domain signature 136 157 IPR002100 GO:0003677|GO:0046983
Acco12g0903 485 PANTHER SERUM RESPONSE FACTOR HOMOLOG 99 289 - -
Acco12g0903 485 CDD MADS 100 152 - -
Acco12g0903 485 SUPERFAMILY SRF-like 100 193 IPR036879 GO:0003677|GO:0046983
Acco12g0903 485 ProSiteProfiles MADS-box domain profile. 99 151 IPR002100 GO:0003677|GO:0046983
Acco12g0903 485 Coils Coil 175 195 - -
Acco12g0903 485 SMART madsneu2 99 158 IPR002100 GO:0003677|GO:0046983
Acco12g0903 485 Gene3D - 112 195 IPR036879 GO:0003677|GO:0046983
Acco12g0903 485 Coils Coil 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0903 Acco-ChrAcco12 9041981 9048706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0903 99 418 Type I MADS-box Gene Family AT2G03060 43.947 3.45e-90 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco12g0903 SRF-TF 2.2e-18 No_clan