Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0879 ATGGACTTGACCCCCACCACCACCGCCTCCGCCACCTCCACCGGCCACTTTGATTCTCTCCATACCCCAACCCCACCGCCTATCCACCCTACCAACACCACCAAGGCTCTGTCTTTCCCCAACGGCTCCCTCAAGCGCCATCACCACCCTTCGCCTCATCCGCCGCCGCCGCCCGCCGTTGTTTCCTACAAGGAATGCCTCAAGAACCACGCCGCCAGCATCGGCGGACACGCGCTTGATGGTTGCGGTGAGTTCATGCCTTCCTCCGCCTCTAACCCCACTGACCCACGCTCCCTCAAATGCGCAGCGTGCGGCTGCCACCGCAACTTCCACCGCCGTGACCCCCAAGAGCCTCACTCCGCCAGCCCCAACTTCTTAAGCTGCTTCTACCCTCCGCTGCCTCCTCCGCCGCCGCCGCTGGCTCCCCGGGGTTTAAGCCCGAGCATTAGCCCAAGCTCAAGCCCAAGCAGCACCAGTCTCAGCCCGTTGTCAAGCCCGTCTCCGCCTCCGGTCTCGCATTTCCCTCCTCCTTCCTACCACACATCGGCACCGCACATGTTTGTAGCACTCGGGAGCGCTTATTCTGGACCGTCCGATGAGCAGCATCACCGGAGCTTCATGAATTCTTCGGCAATGAAGACGCCGACCACGACGGAGAAGGAGAGCCCAGGTGGAAGAAAGAGGTACAGAACGAAATTCAGCCAAGAACAGAAGGAGAAGATGCTTCAGTTCTGTGAGAAATTGGGTTGGAGGATGCAGAAAGGAGATAATAGAATGATCCAAGATTTCTGCAATGAGGTTGGTGTCTCCAGAGGAGTGTTCAAAGTTTGGATGCACAACAACAAGAACACTTTCCGGAAAAAATCAGAAATTGGGAACACCCAAACTGAGAAAATCATCAATGAAGGTGATGATCATAATCGAGAAGGTGGTGGTGGGTTTGATTGTGATATAAACGACAGCGATAATCACAGGAATGAAGGTAGCTGTATTAATCTTCAAGTCTCTGTTAATGGATCTTCTTCTTGA 1029 0.5481 MDLTPTTTASATSTGHFDSLHTPTPPPIHPTNTTKALSFPNGSLKRHHHPSPHPPPPPAVVSYKECLKNHAASIGGHALDGCGEFMPSSASNPTDPRSLKCAACGCHRNFHRRDPQEPHSASPNFLSCFYPPLPPPPPPLAPRGLSPSISPSSSPSSTSLSPLSSPSPPPVSHFPPPSYHTSAPHMFVALGSAYSGPSDEQHHRSFMNSSAMKTPTTTEKESPGGRKRYRTKFSQEQKEKMLQFCEKLGWRMQKGDNRMIQDFCNEVGVSRGVFKVWMHNNKNTFRKKSEIGNTQTEKIINEGDDHNREGGGGFDCDINDSDNHRNEGSCINLQVSVNGSSS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0879 342 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 48 284 - -
Acco12g0879 342 MobiDBLite consensus disorder prediction 1 20 - -
Acco12g0879 342 SUPERFAMILY Homeodomain-like 215 287 IPR009057 -
Acco12g0879 342 MobiDBLite consensus disorder prediction 198 219 - -
Acco12g0879 342 MobiDBLite consensus disorder prediction 1 61 - -
Acco12g0879 342 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Acco12g0879 342 NCBIfam homeobox domain, ZF-HD class 226 283 IPR006455 -
Acco12g0879 342 Gene3D - 211 288 - -
Acco12g0879 342 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Acco12g0879 342 FunFam Zinc-finger homeodomain protein 2 213 287 - -
Acco12g0879 342 MobiDBLite consensus disorder prediction 192 228 - -
Acco12g0879 342 MobiDBLite consensus disorder prediction 139 177 - -
Acco12g0879 342 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Acco12g0879 342 MobiDBLite consensus disorder prediction 146 161 - -
Acco12g0879 342 MobiDBLite consensus disorder prediction 162 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0879 Acco-ChrAcco12 8680239 8681267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0879 61 285 ZF-HD Transcription Factor Family AT1G69600 50.000 6.16e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Acco12g0879 ZF-HD_dimer 2.7e-29 No_clan