Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco12g0854 | ATGGCTGATCTTCAGAGAACGATTTTTGGCGATAGGAATATCGAACAGGCAATTACGTCTCTTAAGAAAGGTGCATATCTACTAAAGTACGGGCGCAGGGGGAAGCCAAAGTTCTGCCCGTTTCGGCTTTCCTGTGATGAATCTCTACTCATATGGTATGCTGGAAAGGATGAGAAACAACTAAAGCTAAGTGCTGTTTCAAAAATCATTCCTGGGCAGCGAACTGCCATATTTCAGCGGTATCCTCGGCCTGAAAAGGAGTATCAATCATTTTCACTTATATACAATGATAGGTCCTTGGATTTGATTTGTAAGGACAAGGATGAAGCTGAAACATGGTTTGTGGGTCTTAAGGAATTAATTGGTCGTGGTAATGATCACAAATGGAGGTGTGAATCAAGAAGTGAAAGTGCTGGTTCAGATAGTCCACAGCATCAAGCCCAAAGGAATTCTCCCGTGATTGCACCATTTGACCTGGTAGATTCAGAAGAATTTTCTTTTGAGAGTACTTCAGAGAATAGATTAGGAAAGGCTTTCTCTGAAATTATTTCATATACTGCTGCTGGCAAGAGTCCCTCTCAAGCTGAATCAAATGCAAATTTCTGTGCGTCTCCTGGATCTGGGGATAACTCAAACAATCGGAGTTCTACTGCTGAGCCAATTCGAGTTAGCTTATCCAGTGCTGTTAGTTCATCCAGCCATAGTTCTTATCAAGAAGATTTTGATGCTATAGGTGATGTTTTTATTTTTGGTGAAGGTGTTGGTGATGGAATCCTTGGTGGTGGTTTGCATAGACTTGGAACCTCATCTGGTTCTGAGATGGATGCATTTCTCCCCAAGGCATTGGAATCGAAAGTAGTCCTGGATGTTCAGAGTATTGCTTGTGGCTACAAACATGCTGCTCTTGTTACCAAGCAAGGAGAGATATATAGTTGGGGGGAGGAATTAGGAGGTAGGTTAGGGCATGGTGTAGAAGTGGATGTTTCTCACCCTAAACTCATTGACTCTCTTAATGGCATAAATATTGAATTAGTAGGATGCGGAGAGTATCACACTTGTGCTGTCACATTTTCTGGGGATCTTTATACTTGGGGTGATGGCATTCACAATTCTGGATTACTGGGGCTTGGAAATGAAGTCAGTCACTGGATTCCTAAGAGAGTAAGTGGTAACATGGAAGGTGTACATGTATCCTATGTATCTTGTGGACCTTGGCACACAGCGATTGTGACTTCTTCTGGCCAGTTGTTCACCTTTGGGGATGGATCTTTTGGTGCCTTAGGTCTAGGAGATCTTAGTAGCACAAATACTCCTAGGGAAGTAGAAACTTTGAAAGGATTGAGAACAACCAGGGTCTCATGTGGAATTTGGCACACTGCTGCTGCTGTTGAGGTGGCAACTGAATCTATGGAATCTTCTAGACACTTACCTGTAGGAAAACTGTTCACCTGGGGTGATGGAGATAAAGGACGGCTTGGGCATGGTGATAGCAAACCTAGACTAGTTCCCCAGTGTGTTATTTCATTGGATGATCAAAATATTTGTCAAGTGGCTTGTGGTCACAGTCTCACTGTTGCTTTGACAGCCTCAGGGCATGTATATACAATGGGCAGTACCACTTATGGGCAACTTGGCAGTCCTGCGGCTGATGGAAAATTCCCTACACAGGTCAAAGGTAAAATTGCTGGCAGTTTCATAGAAGATATTGCCTGTGGATCATATCATGTTGGAGTCCTGACTTCCAAAGCAGAGGTTTACACCTGGGGAAAGGGTTCTAATGGGCAGCTAGGTCATGGAGACAATGGTCACCGAGATACACCTACACTTGTTAAGTATTTTGAAAATAAGCAAGCGAGGAGTGTGGTCTGTGGTTCAAACTTCACTGCTGTTATATGTCCTCATAAATGGGCATCAAGTGCTGACCAATCTGTGTGTTCTGGTTGTCACAATCCTTTTGGATTCAGAAGAAAACGTCATAATTGTTACAACTGTGGACTGGTTTTTTGTTCAGCATGCAGCAGTAGAAAATCTACTAAAGCTTCTCTGGCTCCTAATTCAAACAAGCCATATCGTGTTTGCGATGACTGTTATTCTAAACTTAAGAAGACCTCAGAATCTGTTTCCTTGGCAAAAACTTCTACATTAAAAAATTTGCCTGACTCTTGGGCTGGTAAATTACAGGGAAAACTATTAAGGATTTCATCTTTTGGCTCTACTGTTCAAGCAGAAAGCAGACACTCAAAGGTACCAGAACCAAATCATAGCCATGTTTTTCCAGCTCTGAATGGAAAATTACAGTTGGGGGGATTCAGTCCTCTAAAAGCACCAAATCCTCTTGCTGGGGCATCAGAGAAGCCCCTGTCAGTTTTGATGCCTGCAAGTGGTTTGAATTCTGAAGTGTCATCTCCAGTTTCTGAAAAATTGAGCCCACGATTGCCTTCTGAAGATGTCCATGATGATTCAAAGCACAGAAACAGCATTTTAAGCCAGGATGTTATAAGTTTAAGGCTACAGGTTGAAGATCTTACTCTTAAATCGAAGCATCTTGAGGCTGAACTTGAGAGGACATCAAAACAATTAAAGGAAGTGACTGCAGTAGCAGCAGAAGAAGCCGAGAAGTGTAAATCTGCTAAAGAGGTTATTAAGTCATTGACTGCTCAGTTGAAAGAATTGGTACAAAGAGTGCCTGAGGGAGGAATTGCTAGCTCTAGTGCTAACTTCTCTGCTGAAATTACCTCTAACGTTCTAAATCAGTCTTCAAATGAGAGCCAGATAGCAAACAGTATCACTCCTGAAACTGAGTCCAACAGCCATGCTGAAAATCGGATATTGCTTAGTATTCCCCAAGCACAAAGTGGAAAATCAGAGTGGATGGTGCAAGATGAACCAGGTGTATACATAAGTTTGTCCTCCTTGCCAAGTGGTGGCAATGAACTTAAACGCGTGCGTTTCAGTCGGAAATATTTCACAGAACAGGAAGCTGAAAAGTGGTGGGCTGAAAATGGTACCAAAGTTTTGGAGCGGCACAATGTAGTAGTTGCTACATAG | 3048 | 0.4249 | MADLQRTIFGDRNIEQAITSLKKGAYLLKYGRRGKPKFCPFRLSCDESLLIWYAGKDEKQLKLSAVSKIIPGQRTAIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAETWFVGLKELIGRGNDHKWRCESRSESAGSDSPQHQAQRNSPVIAPFDLVDSEEFSFESTSENRLGKAFSEIISYTAAGKSPSQAESNANFCASPGSGDNSNNRSSTAEPIRVSLSSAVSSSSHSSYQEDFDAIGDVFIFGEGVGDGILGGGLHRLGTSSGSEMDAFLPKALESKVVLDVQSIACGYKHAALVTKQGEIYSWGEELGGRLGHGVEVDVSHPKLIDSLNGINIELVGCGEYHTCAVTFSGDLYTWGDGIHNSGLLGLGNEVSHWIPKRVSGNMEGVHVSYVSCGPWHTAIVTSSGQLFTFGDGSFGALGLGDLSSTNTPREVETLKGLRTTRVSCGIWHTAAAVEVATESMESSRHLPVGKLFTWGDGDKGRLGHGDSKPRLVPQCVISLDDQNICQVACGHSLTVALTASGHVYTMGSTTYGQLGSPAADGKFPTQVKGKIAGSFIEDIACGSYHVGVLTSKAEVYTWGKGSNGQLGHGDNGHRDTPTLVKYFENKQARSVVCGSNFTAVICPHKWASSADQSVCSGCHNPFGFRRKRHNCYNCGLVFCSACSSRKSTKASLAPNSNKPYRVCDDCYSKLKKTSESVSLAKTSTLKNLPDSWAGKLQGKLLRISSFGSTVQAESRHSKVPEPNHSHVFPALNGKLQLGGFSPLKAPNPLAGASEKPLSVLMPASGLNSEVSSPVSEKLSPRLPSEDVHDDSKHRNSILSQDVISLRLQVEDLTLKSKHLEAELERTSKQLKEVTAVAAEEAEKCKSAKEVIKSLTAQLKELVQRVPEGGIASSSANFSAEITSNVLNQSSNESQIANSITPETESNSHAENRILLSIPQAQSGKSEWMVQDEPGVYISLSSLPSGGNELKRVRFSRKYFTEQEAEKWWAENGTKVLERHNVVVAT | 1015 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco12g0854 | 1015 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 583 | 634 | IPR000408 | - | |
| Acco12g0854 | 1015 | MobiDBLite | consensus disorder prediction | 794 | 823 | - | - | |
| Acco12g0854 | 1015 | MobiDBLite | consensus disorder prediction | 136 | 151 | - | - | |
| Acco12g0854 | 1015 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 216 | 467 | - | - | |
| Acco12g0854 | 1015 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 245 | 306 | IPR000408 | - | |
| Acco12g0854 | 1015 | MobiDBLite | consensus disorder prediction | 131 | 151 | - | - | |
| Acco12g0854 | 1015 | MobiDBLite | consensus disorder prediction | 794 | 808 | - | - | |
| Acco12g0854 | 1015 | SUPERFAMILY | PH domain-like | 14 | 121 | - | - | |
| Acco12g0854 | 1015 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 479 | 530 | IPR000408 | - | |
| Acco12g0854 | 1015 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 531 | 582 | IPR000408 | - | |
| Acco12g0854 | 1015 | Coils | Coil | 832 | 894 | - | - | |
| Acco12g0854 | 1015 | Gene3D | - | 370 | 635 | IPR009091 | - | |
| Acco12g0854 | 1015 | CDD | PH_PLC_plant-like | 12 | 121 | - | - | |
| Acco12g0854 | 1015 | Pfam | Transcription factor BRX N-terminal domain | 869 | 896 | IPR027988 | - | |
| Acco12g0854 | 1015 | SUPERFAMILY | RCC1/BLIP-II | 245 | 636 | IPR009091 | - | |
| Acco12g0854 | 1015 | SUPERFAMILY | FYVE/PHD zinc finger | 635 | 713 | IPR011011 | - | |
| Acco12g0854 | 1015 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 636 | 712 | IPR013083 | - | |
| Acco12g0854 | 1015 | SMART | fyve_4 | 633 | 702 | IPR000306 | GO:0046872 | |
| Acco12g0854 | 1015 | Pfam | FYVE zinc finger | 635 | 701 | IPR000306 | GO:0046872 | |
| Acco12g0854 | 1015 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 293 | 303 | IPR000408 | - | |
| Acco12g0854 | 1015 | Gene3D | - | 13 | 128 | IPR011993 | - | |
| Acco12g0854 | 1015 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 954 | 1009 | IPR013591 | - | |
| Acco12g0854 | 1015 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 414 | 465 | IPR000408 | - | |
| Acco12g0854 | 1015 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 307 | 358 | IPR000408 | - | |
| Acco12g0854 | 1015 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 413 | 461 | IPR000408 | - | |
| Acco12g0854 | 1015 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 584 | 631 | IPR000408 | - | |
| Acco12g0854 | 1015 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 530 | 578 | IPR000408 | - | |
| Acco12g0854 | 1015 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 479 | 527 | IPR000408 | - | |
| Acco12g0854 | 1015 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 307 | 355 | IPR000408 | - | |
| Acco12g0854 | 1015 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 358 | 409 | IPR000408 | - | |
| Acco12g0854 | 1015 | MobiDBLite | consensus disorder prediction | 191 | 219 | - | - | |
| Acco12g0854 | 1015 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 57 | 889 | - | - | |
| Acco12g0854 | 1015 | PRINTS | Chromosome condensation regulator RCC1 signature | 578 | 599 | IPR000408 | - | |
| Acco12g0854 | 1015 | PRINTS | Chromosome condensation regulator RCC1 signature | 309 | 325 | IPR000408 | - | |
| Acco12g0854 | 1015 | PRINTS | Chromosome condensation regulator RCC1 signature | 400 | 416 | IPR000408 | - | |
| Acco12g0854 | 1015 | PRINTS | Chromosome condensation regulator RCC1 signature | 359 | 375 | IPR000408 | - | |
| Acco12g0854 | 1015 | PRINTS | Chromosome condensation regulator RCC1 signature | 520 | 538 | IPR000408 | - | |
| Acco12g0854 | 1015 | PRINTS | Chromosome condensation regulator RCC1 signature | 416 | 430 | IPR000408 | - | |
| Acco12g0854 | 1015 | ProSiteProfiles | BRX domain profile. | 955 | 1010 | IPR013591 | - | |
| Acco12g0854 | 1015 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 359 | 413 | IPR000408 | - | |
| Acco12g0854 | 1015 | Gene3D | - | 183 | 369 | IPR009091 | - | |
| Acco12g0854 | 1015 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 639 | 701 | IPR017455 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco12g0854 | Acco-ChrAcco12 | 8405079 | 8415316 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco12g0854 | 953 | 1011 | Major Intrinsic Protein MIP | AT1G31880 | 55.932 | 4.28e-17 | 82.4 |